Analysis of interatomic Contacts of Structural Units in PDB entry:
6AF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AF6 entry

There is 1 chain in PDB entry 6AF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6AF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 23Right-handed alpha
Helix 2
AA2
A
27 34Right-handed alpha
Helix 3
AA3
A
38 49Right-handed alpha
Helix 4
AA4
A
56 60Right-handed 310
Helix 5
AA5
A
65 80Right-handed alpha
Helix 6
AA6
A
82 96Right-handed alpha
Helix 7
AA7
A
96 104Right-handed alpha
Helix 8
AA8
A
105 118Right-handed alpha
Helix 9
AA9
A
135 139Right-handed 310
Helix 10
AB1
A
162 165Right-handed 310
Helix 11
AB2
A
179 181Right-handed 310
Helix 12
AB3
A
232 247Right-handed alpha
Helix 13
AB4
A
249 270Right-handed alpha
Helix 14
AB5
A
280 310Right-handed alpha
Helix 15
AB6
A
314 341Right-handed alpha
Helix 16
AB7
A
342 345Right-handed 310
Helix 17
AB8
A
350 359Right-handed alpha
Helix 18
AB9
A
360 363Right-handed 310
Helix 19
AC1
A
367 379Right-handed alpha
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There are 3 sheets in PDB entry 6AF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
167 173parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
226 227anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
149 160anti-parallel
Strand 3
A
211 222anti-parallel
Strand 4
A
195 197anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
275 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il