Analysis of interatomic Contacts of Structural Units in PDB entry:
6AFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AFP entry

There are 2 chains in PDB entry 6AFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 22VAL 291
B
 GLY 22VAL 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6AFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 39Right-handed alpha
Helix 2
AA2
A
71 85Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
108 113Right-handed 310
Helix 5
AA5
A
119 130Right-handed alpha
Helix 6
AA6
A
131 143Right-handed alpha
Helix 7
AA7
A
144 155Right-handed alpha
Helix 8
AA8
A
167 171Right-handed 310
Helix 9
AA9
A
182 195Right-handed alpha
Helix 10
AB1
A
199 213Right-handed alpha
Helix 11
AB2
A
220 225Right-handed 310
Helix 12
AB3
A
275 291Right-handed alpha
Helix 13
AB4
B
23 39Right-handed alpha
Helix 14
AB5
B
71 84Right-handed alpha
Helix 15
AB6
B
89 92Right-handed 310
Helix 16
AB7
B
98 102Right-handed 310
Helix 17
AB8
B
108 113Right-handed 310
Helix 18
AB9
B
119 129Right-handed alpha
Helix 19
AC1
B
131 143Right-handed alpha
Helix 20
AC2
B
144 155Right-handed alpha
Helix 21
AC3
B
167 171Right-handed 310
Helix 22
AC4
B
182 195Right-handed alpha
Helix 23
AC5
B
200 213Right-handed alpha
Helix 24
AC6
B
220 225Right-handed alpha
Helix 25
AC7
B
275 291Right-handed alpha
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There are 6 sheets in PDB entry 6AFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
43 51anti-parallel
Strand 3
A
259 267anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
230 238anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
114 118anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
43 51anti-parallel
Strand 3
B
259 267anti-parallel
Strand 4
B
243 251anti-parallel
Strand 5
B
230 238anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
114 118anti-parallel
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