Analysis of interatomic Contacts of Structural Units in PDB entry:
6AFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AFS entry

There are 2 chains in PDB entry 6AFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PHE 766
B
 GLY 2PHE 766
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6AFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 34Right-handed alpha
Helix 2
AA2
A
68 113Right-handed alpha
Helix 3
AA3
A
114 116Right-handed 310
Helix 4
AA4
A
134 175Right-handed alpha
Helix 5
AA5
A
178 217Right-handed alpha
Helix 6
AA6
A
219 228Right-handed alpha
Helix 7
AA7
A
228 261Right-handed alpha
Helix 8
AA8
A
275 286Right-handed alpha
Helix 9
AA9
A
288 312Right-handed alpha
Helix 10
AB1
A
313 318Right-handed alpha
Helix 11
AB2
A
320 325Right-handed alpha
Helix 12
AB3
A
325 347Right-handed alpha
Helix 13
AB4
A
353 355Right-handed 310
Helix 14
AB5
A
356 384Right-handed alpha
Helix 15
AB6
A
401 427Right-handed alpha
Helix 16
AB7
A
430 440Right-handed alpha
Helix 17
AB8
A
443 459Right-handed alpha
Helix 18
AB9
A
459 490Right-handed alpha
Helix 19
AC1
A
492 516Right-handed alpha
Helix 20
AC2
A
519 563Right-handed alpha
Helix 21
AC3
A
572 615Right-handed alpha
Helix 22
AC4
A
626 642Right-handed alpha
Helix 23
AC5
A
642 660Right-handed alpha
Helix 24
AC6
A
661 700Right-handed alpha
Helix 25
AC7
A
702 709Right-handed alpha
Helix 26
AC8
A
713 732Right-handed alpha
Helix 27
AC9
A
732 751Right-handed alpha
Helix 28
AD1
A
751 759Right-handed alpha
Helix 29
AD2
A
760 765Right-handed alpha
Helix 30
AD3
B
7 35Right-handed alpha
Helix 31
AD4
B
68 113Right-handed alpha
Helix 32
AD5
B
134 174Right-handed alpha
Helix 33
AD6
B
178 217Right-handed alpha
Helix 34
AD7
B
219 228Right-handed alpha
Helix 35
AD8
B
228 261Right-handed alpha
Helix 36
AD9
B
275 286Right-handed alpha
Helix 37
AE1
B
288 312Right-handed alpha
Helix 38
AE2
B
313 318Right-handed alpha
Helix 39
AE3
B
320 325Right-handed alpha
Helix 40
AE4
B
325 347Right-handed alpha
Helix 41
AE5
B
353 355Right-handed 310
Helix 42
AE6
B
356 384Right-handed alpha
Helix 43
AE7
B
401 427Right-handed alpha
Helix 44
AE8
B
430 439Right-handed alpha
Helix 45
AE9
B
440 442Right-handed 310
Helix 46
AF1
B
443 459Right-handed alpha
Helix 47
AF2
B
459 490Right-handed alpha
Helix 48
AF3
B
492 516Right-handed alpha
Helix 49
AF4
B
519 563Right-handed alpha
Helix 50
AF5
B
572 615Right-handed alpha
Helix 51
AF6
B
626 642Right-handed alpha
Helix 52
AF7
B
642 660Right-handed alpha
Helix 53
AF8
B
661 700Right-handed alpha
Helix 54
AF9
B
702 709Right-handed alpha
Helix 55
AG1
B
713 732Right-handed alpha
Helix 56
AG2
B
733 751Right-handed alpha
Helix 57
AG3
B
751 759Right-handed alpha
Helix 58
AG4
B
760 766Right-handed alpha
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There are 4 sheets in PDB entry 6AFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
127 132anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 392first strand
Strand 2
A
395 400anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
127 132anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 392first strand
Strand 2
B
395 400anti-parallel
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