Analysis of interatomic Contacts of Structural Units in PDB entry:
6AFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AFV entry

There are 2 chains in PDB entry 6AFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PHE 766
B
 GLY 2PHE 766
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6AFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 35Right-handed alpha
Helix 2
AA2
A
68 114Right-handed alpha
Helix 3
AA3
A
134 174Right-handed alpha
Helix 4
AA4
A
175 177Right-handed 310
Helix 5
AA5
A
178 217Right-handed alpha
Helix 6
AA6
A
219 228Right-handed alpha
Helix 7
AA7
A
228 263Right-handed alpha
Helix 8
AA8
A
275 286Right-handed alpha
Helix 9
AA9
A
288 312Right-handed alpha
Helix 10
AB1
A
313 318Right-handed alpha
Helix 11
AB2
A
320 325Right-handed alpha
Helix 12
AB3
A
325 347Right-handed alpha
Helix 13
AB4
A
353 355Right-handed 310
Helix 14
AB5
A
356 384Right-handed alpha
Helix 15
AB6
A
401 427Right-handed alpha
Helix 16
AB7
A
430 439Right-handed alpha
Helix 17
AB8
A
440 442Right-handed 310
Helix 18
AB9
A
443 459Right-handed alpha
Helix 19
AC1
A
459 490Right-handed alpha
Helix 20
AC2
A
492 516Right-handed alpha
Helix 21
AC3
A
519 563Right-handed alpha
Helix 22
AC4
A
572 615Right-handed alpha
Helix 23
AC5
A
626 642Right-handed alpha
Helix 24
AC6
A
642 660Right-handed alpha
Helix 25
AC7
A
661 700Right-handed alpha
Helix 26
AC8
A
702 707Right-handed alpha
Helix 27
AC9
A
713 732Right-handed alpha
Helix 28
AD1
A
732 759Right-handed alpha
Helix 29
AD2
A
760 764Right-handed 310
Helix 30
AD3
B
7 35Right-handed alpha
Helix 31
AD4
B
68 113Right-handed alpha
Helix 32
AD5
B
134 174Right-handed alpha
Helix 33
AD6
B
175 177Right-handed 310
Helix 34
AD7
B
179 217Right-handed alpha
Helix 35
AD8
B
219 228Right-handed alpha
Helix 36
AD9
B
228 262Right-handed alpha
Helix 37
AE1
B
275 286Right-handed alpha
Helix 38
AE2
B
288 312Right-handed alpha
Helix 39
AE3
B
313 318Right-handed alpha
Helix 40
AE4
B
320 325Right-handed alpha
Helix 41
AE5
B
325 347Right-handed alpha
Helix 42
AE6
B
353 355Right-handed 310
Helix 43
AE7
B
356 384Right-handed alpha
Helix 44
AE8
B
401 427Right-handed alpha
Helix 45
AE9
B
430 439Right-handed alpha
Helix 46
AF1
B
440 442Right-handed 310
Helix 47
AF2
B
443 459Right-handed alpha
Helix 48
AF3
B
459 490Right-handed alpha
Helix 49
AF4
B
492 517Right-handed alpha
Helix 50
AF5
B
519 563Right-handed alpha
Helix 51
AF6
B
572 615Right-handed alpha
Helix 52
AF7
B
626 642Right-handed alpha
Helix 53
AF8
B
642 660Right-handed alpha
Helix 54
AF9
B
661 700Right-handed alpha
Helix 55
AG1
B
702 709Right-handed alpha
Helix 56
AG2
B
713 732Right-handed alpha
Helix 57
AG3
B
733 751Right-handed alpha
Helix 58
AG4
B
751 759Right-handed alpha
Helix 59
AG5
B
761 766Right-handed alpha
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There are 4 sheets in PDB entry 6AFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
127 132anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 392first strand
Strand 2
A
395 400anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
127 132anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 391first strand
Strand 2
B
396 400anti-parallel
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