Analysis of interatomic Contacts of Structural Units in PDB entry:
6AG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AG0 entry

There are 2 chains in PDB entry 6AG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3LYS 484
C
 PRO 3THR 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 6AG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 36Right-handed alpha
Helix 2
AA2
A
80 94Right-handed alpha
Helix 3
AA3
A
157 159Right-handed 310
Helix 4
AA4
A
208 227Right-handed alpha
Helix 5
AA5
A
235 239Right-handed 310
Helix 6
AA6
A
240 241Right-handed 310
Helix 7
AA7
A
242 256Right-handed alpha
Helix 8
AA8
A
269 280Right-handed alpha
Helix 9
AA9
A
288 301Right-handed alpha
Helix 10
AB1
A
306 310Right-handed 310
Helix 11
AB2
A
314 319Right-handed alpha
Helix 12
AB3
A
346 357Right-handed alpha
Helix 13
AB4
A
366 371Right-handed alpha
Helix 14
AB5
A
372 376Right-handed 310
Helix 15
AB6
A
380 394Right-handed alpha
Helix 16
AB7
A
441 445Right-handed 310
Helix 17
AB8
C
21 36Right-handed alpha
Helix 18
AB9
C
80 94Right-handed alpha
Helix 19
AC1
C
157 159Right-handed 310
Helix 20
AC2
C
208 227Right-handed alpha
Helix 21
AC3
C
235 239Right-handed 310
Helix 22
AC4
C
242 256Right-handed alpha
Helix 23
AC5
C
269 280Right-handed alpha
Helix 24
AC6
C
288 301Right-handed alpha
Helix 25
AC7
C
306 310Right-handed 310
Helix 26
AC8
C
314 319Right-handed alpha
Helix 27
AC9
C
346 357Right-handed alpha
Helix 28
AD1
C
366 371Right-handed alpha
Helix 29
AD2
C
372 376Right-handed 310
Helix 30
AD3
C
380 394Right-handed alpha
Helix 31
AD4
C
441 445Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 6AG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
40 43parallel
Strand 3
A
97 102parallel
Strand 4
A
230 233parallel
Strand 5
A
260 263parallel
Strand 6
A
285 287parallel
Strand 7
A
323 325parallel
Strand 8
A
361 365parallel
Strand 9
A
8 10parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
202 204anti-parallel
Strand 3
A
161 164anti-parallel
Strand 4
A
176 178anti-parallel
Strand 5
A
112 122anti-parallel
Strand 6
A
125 129anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
202 204anti-parallel
Strand 3
A
161 164anti-parallel
Strand 4
A
176 178anti-parallel
Strand 5
A
112 122anti-parallel
Strand 6
A
134 141anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
424 429anti-parallel
Strand 4
A
477 482anti-parallel
Strand 5
A
448 451anti-parallel
Strand 6
A
460 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 439first strand
Strand 2
A
467 472anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 10first strand
Strand 2
C
40 43parallel
Strand 3
C
97 102parallel
Strand 4
C
230 233parallel
Strand 5
C
260 263parallel
Strand 6
C
285 287parallel
Strand 7
C
323 325parallel
Strand 8
C
361 365parallel
Strand 9
C
8 10parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
48 49first strand
Strand 2
C
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
202 204anti-parallel
Strand 3
C
161 167anti-parallel
Strand 4
C
172 178anti-parallel
Strand 5
C
112 122anti-parallel
Strand 6
C
125 129anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
202 204anti-parallel
Strand 3
C
161 167anti-parallel
Strand 4
C
172 178anti-parallel
Strand 5
C
112 122anti-parallel
Strand 6
C
134 141anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
399 402first strand
Strand 2
C
408 413anti-parallel
Strand 3
C
424 429anti-parallel
Strand 4
C
477 482anti-parallel
Strand 5
C
448 451anti-parallel
Strand 6
C
460 461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
434 439first strand
Strand 2
C
467 472anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il