Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AGB entry

There are 11 chains in PDB entry 6AGB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	C 369
B	GLY 54	VAL 875
C	LYS 14	ILE 188
D	MET 1	ASN 279
E	VAL 2	SER 147
F	ILE 2	GLN 158
G	LYS 13	VAL 140
H	LYS 3	ILE 133
I	MET 1	SER 242
J	MET 1	PRO 293
K	ASN 17	SER 144

There are 88 helices in PDB entry 6AGB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	58	85	Right-handed alpha
Helix 2	AA2	B	88	92	Right-handed 310
Helix 3	AA3	B	99	103	Right-handed 310
Helix 4	AA4	B	112	124	Right-handed alpha
Helix 5	AA5	B	145	166	Right-handed alpha
Helix 6	AA6	B	171	177	Right-handed alpha
Helix 7	AA7	B	181	198	Right-handed alpha
Helix 8	AA8	B	231	235	Right-handed 310
Helix 9	AA9	B	242	249	Right-handed alpha
Helix 10	AB1	B	268	276	Right-handed alpha
Helix 11	AB2	B	307	318	Right-handed alpha
Helix 12	AB3	B	324	330	Right-handed alpha
Helix 13	AB4	B	371	385	Right-handed alpha
Helix 14	AB5	B	407	416	Right-handed alpha
Helix 15	AB6	B	422	432	Right-handed alpha
Helix 16	AB7	B	452	456	Right-handed 310
Helix 17	AB8	B	465	469	Right-handed 310
Helix 18	AB9	B	472	481	Right-handed alpha
Helix 19	AC1	B	483	496	Right-handed alpha
Helix 20	AC2	B	496	503	Right-handed alpha
Helix 21	AC3	B	504	506	Right-handed 310
Helix 22	AC4	B	509	524	Right-handed alpha
Helix 23	AC5	B	564	571	Right-handed alpha
Helix 24	AC6	B	582	593	Right-handed alpha
Helix 25	AC7	B	597	602	Right-handed alpha
Helix 26	AC8	B	605	627	Right-handed alpha
Helix 27	AC9	B	660	678	Right-handed alpha
Helix 28	AD1	B	702	718	Right-handed alpha
Helix 29	AD2	B	788	798	Right-handed alpha
Helix 30	AD3	B	816	818	Right-handed 310
Helix 31	AD4	B	844	850	Right-handed alpha
Helix 32	AD5	C	27	32	Right-handed alpha
Helix 33	AD6	C	40	57	Right-handed alpha
Helix 34	AD7	C	71	79	Right-handed alpha
Helix 35	AD8	C	101	106	Right-handed alpha
Helix 36	AD9	C	107	112	Right-handed alpha
Helix 37	AE1	C	130	136	Right-handed alpha
Helix 38	AE2	C	150	158	Right-handed alpha
Helix 39	AE3	D	5	10	Right-handed alpha
Helix 40	AE4	D	78	82	Right-handed alpha
Helix 41	AE5	D	84	111	Right-handed alpha
Helix 42	AE6	D	114	126	Right-handed alpha
Helix 43	AE7	D	126	131	Right-handed alpha
Helix 44	AE8	D	135	155	Right-handed alpha
Helix 45	AE9	D	165	176	Right-handed alpha
Helix 46	AF1	D	256	261	Right-handed alpha
Helix 47	AF2	D	270	273	Right-handed 310
Helix 48	AF3	D	274	279	Right-handed alpha
Helix 49	AF4	E	27	36	Right-handed alpha
Helix 50	AF5	E	44	60	Right-handed alpha
Helix 51	AF6	E	62	69	Right-handed alpha
Helix 52	AF7	E	92	102	Right-handed alpha
Helix 53	AF8	E	122	147	Right-handed alpha
Helix 54	AF9	F	18	29	Right-handed alpha
Helix 55	AG1	F	54	66	Right-handed alpha
Helix 56	AG2	F	87	101	Right-handed alpha
Helix 57	AG3	F	102	106	Right-handed 310
Helix 58	AG4	G	40	59	Right-handed alpha
Helix 59	AG5	G	71	83	Right-handed alpha
Helix 60	AG6	H	20	27	Right-handed alpha
Helix 61	AG7	H	30	45	Right-handed alpha
Helix 62	AG8	H	47	52	Right-handed alpha
Helix 63	AG9	H	73	82	Right-handed alpha
Helix 64	AH1	H	114	133	Right-handed alpha
Helix 65	AH2	I	19	37	Right-handed alpha
Helix 66	AH3	I	68	76	Right-handed alpha
Helix 67	AH4	I	99	104	Right-handed alpha
Helix 68	AH5	I	113	123	Right-handed alpha
Helix 69	AH6	I	142	151	Right-handed alpha
Helix 70	AH7	I	161	165	Right-handed 310
Helix 71	AH8	I	167	185	Right-handed alpha
Helix 72	AH9	I	197	201	Right-handed 310
Helix 73	AI1	I	203	215	Right-handed alpha
Helix 74	AI2	I	217	242	Right-handed alpha
Helix 75	AI3	J	19	36	Right-handed alpha
Helix 76	AI4	J	68	77	Right-handed alpha
Helix 77	AI5	J	96	104	Right-handed alpha
Helix 78	AI6	J	113	123	Right-handed alpha
Helix 79	AI7	J	142	153	Right-handed alpha
Helix 80	AI8	J	161	165	Right-handed 310
Helix 81	AI9	J	168	184	Right-handed alpha
Helix 82	AJ1	J	197	201	Right-handed 310
Helix 83	AJ2	J	203	215	Right-handed alpha
Helix 84	AJ3	J	217	227	Right-handed alpha
Helix 85	AJ4	J	227	241	Right-handed alpha
Helix 86	AJ5	K	27	55	Right-handed alpha
Helix 87	AJ6	K	59	77	Right-handed alpha
Helix 88	AJ7	K	82	89	Right-handed alpha

There are 16 sheets in PDB entry 6AGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	390	394	anti-parallel
Strand 3	B	294	299	anti-parallel
Strand 4	B	366	370	anti-parallel
Strand 5	B	351	360	anti-parallel
Strand 6	B	334	340	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	260	264	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	450	first strand
Strand 2	B	543	550	anti-parallel
Strand 3	B	555	560	anti-parallel
Strand 4	B	399	404	anti-parallel
Strand 5	B	286	290	anti-parallel
Strand 6	B	579	580	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	769	first strand
Strand 2	B	835	843	anti-parallel
Strand 3	B	820	830	anti-parallel
Strand 4	B	779	782	anti-parallel
Strand 5	B	854	858	anti-parallel
Strand 6	B	866	872	anti-parallel
Strand 7	B	762	769	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	19	first strand
Strand 2	C	15	23	parallel
Strand 3	C	179	187	anti-parallel
Strand 4	K	141	142	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	140	144	anti-parallel
Strand 3	C	88	94	anti-parallel
Strand 4	C	118	124	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	182	188	anti-parallel
Strand 3	D	228	235	anti-parallel
Strand 4	D	243	249	anti-parallel
Strand 5	J	247	248	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	211	first strand
Strand 2	D	220	224	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	78	first strand
Strand 2	E	83	89	anti-parallel
Strand 3	E	6	14	anti-parallel
Strand 4	E	113	120	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	4	7	anti-parallel
Strand 3	F	110	123	anti-parallel
Strand 4	F	130	143	anti-parallel
Strand 5	F	76	84	anti-parallel
Strand 6	F	42	48	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	4	7	anti-parallel
Strand 3	F	110	123	anti-parallel
Strand 4	F	156	157	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	90	104	anti-parallel
Strand 3	G	124	139	anti-parallel
Strand 4	G	62	68	anti-parallel
Strand 5	G	32	34	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	61	first strand
Strand 2	H	64	70	anti-parallel
Strand 3	H	9	17	anti-parallel
Strand 4	H	96	103	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	8	first strand
Strand 2	I	40	48	parallel
Strand 3	I	79	88	parallel
Strand 4	I	106	111	parallel
Strand 5	I	128	130	parallel
Strand 6	I	155	159	parallel
Strand 7	I	189	192	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	8	first strand
Strand 2	J	40	48	parallel
Strand 3	J	80	87	parallel
Strand 4	J	106	109	parallel
Strand 5	J	128	130	parallel
Strand 6	J	155	159	parallel
Strand 7	J	189	192	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	105	first strand
Strand 2	K	111	114	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AGB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGB