Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGG entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 6AGG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Z
 MET 1CYS 17
Z
 THR 19ARG 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6AGG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Z
19 33Right-handed alpha
Helix 2
AA2
Z
67 83Right-handed alpha
Helix 3
AA3
Z
99 103Right-handed alpha
Helix 4
AA4
Z
105 115Right-handed alpha
Helix 5
AA5
Z
118 129Right-handed alpha
Helix 6
AA6
Z
140 151Right-handed alpha
Helix 7
AA7
Z
176 188Right-handed alpha
Helix 8
AA8
Z
220 231Right-handed alpha
Helix 9
AA9
Z
256 258Right-handed 310
Helix 10
AB1
Z
301 305Right-handed 310
Helix 11
AB2
Z
306 313Right-handed alpha
Helix 12
AB3
Z
397 401Right-handed 310
Helix 13
AB4
Z
407 411Right-handed 310
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There are 6 sheets in PDB entry 6AGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
133 135first strand
Strand 2
Z
93 98anti-parallel
Strand 3
Z
2 8anti-parallel
Strand 4
Z
57 64anti-parallel
Strand 5
Z
35 44anti-parallel
Strand 6
Z
239 244parallel
Strand 7
Z
157 163anti-parallel
Strand 8
Z
212 218anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
195 196first strand
Strand 2
Z
201 202anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
252 254first strand
Strand 2
Z
265 273parallel
Strand 3
Z
319 327anti-parallel
Strand 4
Z
330 338anti-parallel
Strand 5
Z
392 395anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
252 254first strand
Strand 2
Z
265 273parallel
Strand 3
Z
285 291anti-parallel
Strand 4
Z
278 279anti-parallel
Strand 5
Z
285 291anti-parallel
Strand 6
Z
294 300anti-parallel
Strand 7
Z
330 338parallel
Strand 8
Z
392 395anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
345 348first strand
Strand 2
Z
381 384anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
360 361first strand
Strand 2
Z
368 370anti-parallel
Strand 3
Z
375 377anti-parallel
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