Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGH entry

There are 2 chains in PDB entry 6AGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 84ARG 394
B
 SER 84ARG 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6AGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 93Right-handed alpha
Helix 2
AA2
A
105 115Right-handed alpha
Helix 3
AA3
A
128 141Right-handed alpha
Helix 4
AA4
A
147 153Right-handed alpha
Helix 5
AA5
A
159 172Right-handed alpha
Helix 6
AA6
A
174 185Right-handed alpha
Helix 7
AA7
A
193 207Right-handed alpha
Helix 8
AA8
A
232 239Right-handed alpha
Helix 9
AA9
A
249 272Right-handed alpha
Helix 10
AB1
A
279 288Right-handed alpha
Helix 11
AB2
A
292 307Right-handed alpha
Helix 12
AB3
A
314 326Right-handed alpha
Helix 13
AB4
A
327 337Right-handed alpha
Helix 14
AB5
A
346 359Right-handed alpha
Helix 15
AB6
A
363 374Right-handed alpha
Helix 16
AB7
A
383 392Right-handed alpha
Helix 17
AB8
B
85 93Right-handed alpha
Helix 18
AB9
B
105 115Right-handed alpha
Helix 19
AC1
B
128 141Right-handed alpha
Helix 20
AC2
B
147 153Right-handed alpha
Helix 21
AC3
B
159 172Right-handed alpha
Helix 22
AC4
B
174 185Right-handed alpha
Helix 23
AC5
B
193 207Right-handed alpha
Helix 24
AC6
B
232 239Right-handed alpha
Helix 25
AC7
B
249 272Right-handed alpha
Helix 26
AC8
B
279 288Right-handed alpha
Helix 27
AC9
B
296 307Right-handed alpha
Helix 28
AD1
B
314 325Right-handed alpha
Helix 29
AD2
B
327 337Right-handed alpha
Helix 30
AD3
B
346 358Right-handed alpha
Helix 31
AD4
B
363 374Right-handed alpha
Helix 32
AD5
B
384 393Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6AGH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
96 98anti-parallel
Strand 3
A
125 126parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 103first strand
Strand 2
B
96 98anti-parallel
Strand 3
B
125 126parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
247 248anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il