Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGI entry

There are 2 chains in PDB entry 6AGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 142LEU 503
B
 ILE 135ARG 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 6AGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 153Right-handed alpha
Helix 2
AA2
A
164 174Right-handed alpha
Helix 3
AA3
A
187 197Right-handed alpha
Helix 4
AA4
A
200 204Right-handed 310
Helix 5
AA5
A
207 212Right-handed alpha
Helix 6
AA6
A
219 232Right-handed alpha
Helix 7
AA7
A
233 245Right-handed alpha
Helix 8
AA8
A
253 264Right-handed alpha
Helix 9
AA9
A
277 289Right-handed alpha
Helix 10
AB1
A
340 348Right-handed alpha
Helix 11
AB2
A
357 381Right-handed alpha
Helix 12
AB3
A
387 397Right-handed alpha
Helix 13
AB4
A
403 415Right-handed alpha
Helix 14
AB5
A
423 435Right-handed alpha
Helix 15
AB6
A
435 449Right-handed alpha
Helix 16
AB7
A
454 467Right-handed alpha
Helix 17
AB8
A
471 483Right-handed alpha
Helix 18
AB9
A
495 499Right-handed 310
Helix 19
AC1
B
136 140Right-handed alpha
Helix 20
AC2
B
143 153Right-handed alpha
Helix 21
AC3
B
164 174Right-handed alpha
Helix 22
AC4
B
187 197Right-handed alpha
Helix 23
AC5
B
200 204Right-handed 310
Helix 24
AC6
B
207 212Right-handed alpha
Helix 25
AC7
B
219 232Right-handed alpha
Helix 26
AC8
B
233 245Right-handed alpha
Helix 27
AC9
B
253 269Right-handed alpha
Helix 28
AD1
B
276 289Right-handed alpha
Helix 29
AD2
B
340 348Right-handed alpha
Helix 30
AD3
B
356 381Right-handed alpha
Helix 31
AD4
B
387 396Right-handed alpha
Helix 32
AD5
B
397 399Right-handed 310
Helix 33
AD6
B
403 415Right-handed alpha
Helix 34
AD7
B
423 435Right-handed alpha
Helix 35
AD8
B
435 443Right-handed alpha
Helix 36
AD9
B
443 449Right-handed alpha
Helix 37
AE1
B
455 467Right-handed alpha
Helix 38
AE2
B
471 483Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6AGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
184 185parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
421 422anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
155 157anti-parallel
Strand 3
B
184 185parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
421 422anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 454first strand
Strand 2
B
489 490anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il