Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGJ entry

There are 2 chains in PDB entry 6AGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 138PHE 507
B
 ASP 139HIS 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 6AGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 153Right-handed alpha
Helix 2
AA2
A
164 172Right-handed alpha
Helix 3
AA3
A
187 197Right-handed alpha
Helix 4
AA4
A
200 204Right-handed 310
Helix 5
AA5
A
207 213Right-handed alpha
Helix 6
AA6
A
219 232Right-handed alpha
Helix 7
AA7
A
234 245Right-handed alpha
Helix 8
AA8
A
253 267Right-handed alpha
Helix 9
AA9
A
282 288Right-handed alpha
Helix 10
AB1
A
340 348Right-handed alpha
Helix 11
AB2
A
357 381Right-handed alpha
Helix 12
AB3
A
387 397Right-handed alpha
Helix 13
AB4
A
400 414Right-handed alpha
Helix 14
AB5
A
423 435Right-handed alpha
Helix 15
AB6
A
435 446Right-handed alpha
Helix 16
AB7
A
454 467Right-handed alpha
Helix 17
AB8
A
471 483Right-handed alpha
Helix 18
AB9
A
492 506Right-handed alpha
Helix 19
AC1
B
143 153Right-handed alpha
Helix 20
AC2
B
164 174Right-handed alpha
Helix 21
AC3
B
187 197Right-handed alpha
Helix 22
AC4
B
200 204Right-handed 310
Helix 23
AC5
B
207 213Right-handed alpha
Helix 24
AC6
B
219 232Right-handed alpha
Helix 25
AC7
B
234 245Right-handed alpha
Helix 26
AC8
B
253 288Right-handed alpha
Helix 27
AC9
B
340 348Right-handed alpha
Helix 28
AD1
B
357 381Right-handed alpha
Helix 29
AD2
B
387 397Right-handed alpha
Helix 30
AD3
B
400 414Right-handed alpha
Helix 31
AD4
B
423 435Right-handed alpha
Helix 32
AD5
B
435 447Right-handed alpha
Helix 33
AD6
B
454 467Right-handed alpha
Helix 34
AD7
B
471 483Right-handed alpha
Helix 35
AD8
B
492 504Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6AGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
184 186parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
421 422anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 453first strand
Strand 2
A
490 491anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
155 157anti-parallel
Strand 3
B
184 186parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
355 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
421 422anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
452 453first strand
Strand 2
B
490 491anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il