Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGL entry

There are 2 chains in PDB entry 6AGL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 10GLN 350
B
 HIS 10GLN 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6AGL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
30 49Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
119 137Right-handed alpha
Helix 5
AA5
A
150 155Right-handed alpha
Helix 6
AA6
A
156 158Right-handed 310
Helix 7
AA7
A
164 169Right-handed alpha
Helix 8
AA8
A
170 180Right-handed alpha
Helix 9
AA9
A
193 205Right-handed alpha
Helix 10
AB1
A
243 257Right-handed alpha
Helix 11
AB2
A
268 273Right-handed alpha
Helix 12
AB3
A
275 277Right-handed 310
Helix 13
AB4
A
278 292Right-handed alpha
Helix 14
AB5
A
332 347Right-handed alpha
Helix 15
AB6
B
19 27Right-handed alpha
Helix 16
AB7
B
30 49Right-handed alpha
Helix 17
AB8
B
66 82Right-handed alpha
Helix 18
AB9
B
119 137Right-handed alpha
Helix 19
AC1
B
150 155Right-handed alpha
Helix 20
AC2
B
156 158Right-handed 310
Helix 21
AC3
B
164 169Right-handed alpha
Helix 22
AC4
B
170 180Right-handed alpha
Helix 23
AC5
B
193 205Right-handed alpha
Helix 24
AC6
B
243 257Right-handed alpha
Helix 25
AC7
B
268 273Right-handed alpha
Helix 26
AC8
B
275 277Right-handed 310
Helix 27
AC9
B
278 292Right-handed alpha
Helix 28
AD1
B
332 347Right-handed alpha
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There are 4 sheets in PDB entry 6AGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
88 93parallel
Strand 3
A
141 144parallel
Strand 4
A
160 163parallel
Strand 5
A
184 187parallel
Strand 6
A
230 234parallel
Strand 7
A
263 266parallel
Strand 8
A
297 303parallel
Strand 9
A
55 60parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 213first strand
Strand 2
A
219 224anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
88 93parallel
Strand 3
B
141 144parallel
Strand 4
B
160 163parallel
Strand 5
B
184 187parallel
Strand 6
B
230 234parallel
Strand 7
B
263 266parallel
Strand 8
B
297 303parallel
Strand 9
B
55 60parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 213first strand
Strand 2
B
219 224anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il