Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGM entry

There are 4 chains in PDB entry 6AGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4VAL 355
B
 ASP 4VAL 355
C
 ASP 4VAL 355
D
 ASP 4TRP 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 6AGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 27Right-handed alpha
Helix 2
AA2
A
30 49Right-handed alpha
Helix 3
AA3
A
66 85Right-handed alpha
Helix 4
AA4
A
106 111Right-handed alpha
Helix 5
AA5
A
119 137Right-handed alpha
Helix 6
AA6
A
149 155Right-handed alpha
Helix 7
AA7
A
156 158Right-handed 310
Helix 8
AA8
A
164 169Right-handed alpha
Helix 9
AA9
A
175 180Right-handed 310
Helix 10
AB1
A
194 205Right-handed alpha
Helix 11
AB2
A
243 257Right-handed alpha
Helix 12
AB3
A
268 273Right-handed alpha
Helix 13
AB4
A
275 277Right-handed 310
Helix 14
AB5
A
278 292Right-handed alpha
Helix 15
AB6
A
332 348Right-handed alpha
Helix 16
AB7
B
19 27Right-handed alpha
Helix 17
AB8
B
30 49Right-handed alpha
Helix 18
AB9
B
66 84Right-handed alpha
Helix 19
AC1
B
119 137Right-handed alpha
Helix 20
AC2
B
148 155Right-handed alpha
Helix 21
AC3
B
156 158Right-handed 310
Helix 22
AC4
B
164 169Right-handed alpha
Helix 23
AC5
B
175 180Right-handed 310
Helix 24
AC6
B
193 205Right-handed alpha
Helix 25
AC7
B
243 257Right-handed alpha
Helix 26
AC8
B
275 277Right-handed 310
Helix 27
AC9
B
278 292Right-handed alpha
Helix 28
AD1
B
332 348Right-handed alpha
Helix 29
AD2
C
19 27Right-handed alpha
Helix 30
AD3
C
30 49Right-handed alpha
Helix 31
AD4
C
66 85Right-handed alpha
Helix 32
AD5
C
106 111Right-handed alpha
Helix 33
AD6
C
119 137Right-handed alpha
Helix 34
AD7
C
149 155Right-handed alpha
Helix 35
AD8
C
156 158Right-handed 310
Helix 36
AD9
C
164 169Right-handed alpha
Helix 37
AE1
C
175 180Right-handed 310
Helix 38
AE2
C
193 205Right-handed alpha
Helix 39
AE3
C
243 257Right-handed alpha
Helix 40
AE4
C
268 273Right-handed alpha
Helix 41
AE5
C
275 277Right-handed 310
Helix 42
AE6
C
278 292Right-handed alpha
Helix 43
AE7
C
332 347Right-handed alpha
Helix 44
AE8
C
351 355Right-handed 310
Helix 45
AE9
D
19 27Right-handed alpha
Helix 46
AF1
D
30 49Right-handed alpha
Helix 47
AF2
D
66 85Right-handed alpha
Helix 48
AF3
D
106 111Right-handed alpha
Helix 49
AF4
D
119 137Right-handed alpha
Helix 50
AF5
D
149 155Right-handed alpha
Helix 51
AF6
D
156 158Right-handed 310
Helix 52
AF7
D
164 169Right-handed alpha
Helix 53
AF8
D
175 180Right-handed 310
Helix 54
AF9
D
193 205Right-handed alpha
Helix 55
AG1
D
243 257Right-handed alpha
Helix 56
AG2
D
268 273Right-handed alpha
Helix 57
AG3
D
275 277Right-handed 310
Helix 58
AG4
D
278 292Right-handed alpha
Helix 59
AG5
D
332 347Right-handed alpha
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There are 8 sheets in PDB entry 6AGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
88 93parallel
Strand 3
A
141 145parallel
Strand 4
A
160 163parallel
Strand 5
A
184 187parallel
Strand 6
A
230 234parallel
Strand 7
A
263 266parallel
Strand 8
A
297 303parallel
Strand 9
A
55 60parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 213first strand
Strand 2
A
219 223anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
88 93parallel
Strand 3
B
141 145parallel
Strand 4
B
160 163parallel
Strand 5
B
184 187parallel
Strand 6
B
230 234parallel
Strand 7
B
263 266parallel
Strand 8
B
297 303parallel
Strand 9
B
55 60parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
219 223anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 60first strand
Strand 2
C
88 93parallel
Strand 3
C
141 145parallel
Strand 4
C
160 163parallel
Strand 5
C
184 187parallel
Strand 6
C
230 234parallel
Strand 7
C
263 266parallel
Strand 8
C
297 303parallel
Strand 9
C
55 60parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
209 213first strand
Strand 2
C
219 223anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 60first strand
Strand 2
D
88 93parallel
Strand 3
D
141 145parallel
Strand 4
D
160 163parallel
Strand 5
D
184 187parallel
Strand 6
D
230 234parallel
Strand 7
D
263 266parallel
Strand 8
D
297 303parallel
Strand 9
D
55 60parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
209 213first strand
Strand 2
D
219 223anti-parallel
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