Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AGO entry

There are 4 chains in PDB entry 6AGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2035	GLY 2280
B	LYS 2036	CYS 2275
C	GLU 155	LYS 321
D	GLU 155	ARG 320

There are 29 helices in PDB entry 6AGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2048	2057	Right-handed alpha
Helix 2	AA2	A	2108	2113	Right-handed alpha
Helix 3	AA3	A	2124	2128	Right-handed 310
Helix 4	AA4	A	2175	2186	Right-handed alpha
Helix 5	AA5	A	2189	2193	Right-handed 310
Helix 6	AA6	A	2211	2216	Right-handed 310
Helix 7	AA7	B	2048	2058	Right-handed alpha
Helix 8	AA8	B	2108	2113	Right-handed alpha
Helix 9	AA9	B	2176	2185	Right-handed alpha
Helix 10	AB1	B	2211	2216	Right-handed 310
Helix 11	AB2	C	164	177	Right-handed alpha
Helix 12	AB3	C	189	203	Right-handed alpha
Helix 13	AB4	C	210	233	Right-handed alpha
Helix 14	AB5	C	238	249	Right-handed alpha
Helix 15	AB6	C	253	257	Right-handed 310
Helix 16	AB7	C	259	267	Right-handed alpha
Helix 17	AB8	C	269	275	Right-handed alpha
Helix 18	AB9	C	283	301	Right-handed alpha
Helix 19	AC1	C	301	306	Right-handed alpha
Helix 20	AC2	C	307	309	Right-handed 310
Helix 21	AC3	D	164	177	Right-handed alpha
Helix 22	AC4	D	189	201	Right-handed alpha
Helix 23	AC5	D	213	233	Right-handed alpha
Helix 24	AC6	D	238	249	Right-handed alpha
Helix 25	AC7	D	253	257	Right-handed 310
Helix 26	AC8	D	259	268	Right-handed alpha
Helix 27	AC9	D	269	277	Right-handed alpha
Helix 28	AD1	D	283	301	Right-handed alpha
Helix 29	AD2	D	307	309	Right-handed 310

There are 11 sheets in PDB entry 6AGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2070	2071	first strand
Strand 2	A	2209	2210	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2076	2077	first strand
Strand 2	A	2172	2174	parallel
Strand 3	A	2203	2205	anti-parallel
Strand 4	A	2195	2197	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2142	2146	first strand
Strand 2	A	2152	2156	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2165	2168	first strand
Strand 2	A	2234	2241	anti-parallel
Strand 3	A	2224	2231	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2217	2218	first strand
Strand 2	A	2252	2253	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2070	2071	first strand
Strand 2	B	2209	2210	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2076	2077	first strand
Strand 2	B	2172	2175	parallel
Strand 3	B	2202	2205	anti-parallel
Strand 4	B	2195	2197	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2142	2146	first strand
Strand 2	B	2152	2156	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2165	2168	first strand
Strand 2	B	2234	2241	anti-parallel
Strand 3	B	2224	2231	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	182	first strand
Strand 2	C	311	313	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	182	first strand
Strand 2	D	311	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGO