Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AGQ entry

There are 6 chains in PDB entry 6AGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 6	LEU 321
B	MET 6	LEU 321
C	MET 6	LEU 321
D	MET 6	LEU 321
E	MET 6	LEU 321
F	MET 6	LEU 321

There are 80 helices in PDB entry 6AGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	23	37	Right-handed alpha
Helix 3	AA3	A	101	104	Right-handed 310
Helix 4	AA4	A	105	111	Right-handed alpha
Helix 5	AA5	A	148	151	Right-handed 310
Helix 6	AA6	A	152	171	Right-handed alpha
Helix 7	AA7	A	185	198	Right-handed alpha
Helix 8	AA8	A	213	220	Right-handed alpha
Helix 9	AA9	A	225	237	Right-handed alpha
Helix 10	AB1	A	242	252	Right-handed alpha
Helix 11	AB2	A	254	260	Right-handed alpha
Helix 12	AB3	A	278	287	Right-handed alpha
Helix 13	AB4	A	308	321	Right-handed alpha
Helix 14	AB5	B	7	13	Right-handed alpha
Helix 15	AB6	B	23	37	Right-handed alpha
Helix 16	AB7	B	101	104	Right-handed 310
Helix 17	AB8	B	105	111	Right-handed alpha
Helix 18	AB9	B	148	151	Right-handed 310
Helix 19	AC1	B	152	170	Right-handed alpha
Helix 20	AC2	B	185	198	Right-handed alpha
Helix 21	AC3	B	213	220	Right-handed alpha
Helix 22	AC4	B	223	225	Right-handed 310
Helix 23	AC5	B	226	237	Right-handed alpha
Helix 24	AC6	B	242	252	Right-handed alpha
Helix 25	AC7	B	254	260	Right-handed alpha
Helix 26	AC8	B	278	287	Right-handed alpha
Helix 27	AC9	B	308	321	Right-handed alpha
Helix 28	AD1	C	7	13	Right-handed alpha
Helix 29	AD2	C	23	37	Right-handed alpha
Helix 30	AD3	C	101	104	Right-handed 310
Helix 31	AD4	C	105	111	Right-handed alpha
Helix 32	AD5	C	152	170	Right-handed alpha
Helix 33	AD6	C	185	198	Right-handed alpha
Helix 34	AD7	C	213	220	Right-handed alpha
Helix 35	AD8	C	223	225	Right-handed 310
Helix 36	AD9	C	226	237	Right-handed alpha
Helix 37	AE1	C	242	252	Right-handed alpha
Helix 38	AE2	C	254	260	Right-handed alpha
Helix 39	AE3	C	278	287	Right-handed alpha
Helix 40	AE4	C	306	321	Right-handed alpha
Helix 41	AE5	D	7	13	Right-handed alpha
Helix 42	AE6	D	23	38	Right-handed alpha
Helix 43	AE7	D	101	104	Right-handed 310
Helix 44	AE8	D	105	111	Right-handed alpha
Helix 45	AE9	D	152	170	Right-handed alpha
Helix 46	AF1	D	185	198	Right-handed alpha
Helix 47	AF2	D	213	220	Right-handed alpha
Helix 48	AF3	D	223	225	Right-handed 310
Helix 49	AF4	D	226	237	Right-handed alpha
Helix 50	AF5	D	242	252	Right-handed alpha
Helix 51	AF6	D	254	260	Right-handed alpha
Helix 52	AF7	D	278	287	Right-handed alpha
Helix 53	AF8	D	306	321	Right-handed alpha
Helix 54	AF9	E	7	12	Right-handed alpha
Helix 55	AG1	E	23	37	Right-handed alpha
Helix 56	AG2	E	101	104	Right-handed 310
Helix 57	AG3	E	105	111	Right-handed alpha
Helix 58	AG4	E	148	151	Right-handed 310
Helix 59	AG5	E	152	170	Right-handed alpha
Helix 60	AG6	E	185	198	Right-handed alpha
Helix 61	AG7	E	213	220	Right-handed alpha
Helix 62	AG8	E	225	237	Right-handed alpha
Helix 63	AG9	E	242	252	Right-handed alpha
Helix 64	AH1	E	254	260	Right-handed alpha
Helix 65	AH2	E	278	287	Right-handed alpha
Helix 66	AH3	E	308	321	Right-handed alpha
Helix 67	AH4	F	7	14	Right-handed alpha
Helix 68	AH5	F	23	37	Right-handed alpha
Helix 69	AH6	F	101	104	Right-handed 310
Helix 70	AH7	F	105	111	Right-handed alpha
Helix 71	AH8	F	148	151	Right-handed 310
Helix 72	AH9	F	152	170	Right-handed alpha
Helix 73	AI1	F	185	198	Right-handed alpha
Helix 74	AI2	F	213	220	Right-handed alpha
Helix 75	AI3	F	223	225	Right-handed 310
Helix 76	AI4	F	226	237	Right-handed alpha
Helix 77	AI5	F	242	252	Right-handed alpha
Helix 78	AI6	F	254	260	Right-handed alpha
Helix 79	AI7	F	278	287	Right-handed alpha
Helix 80	AI8	F	308	321	Right-handed alpha

There are 6 sheets in PDB entry 6AGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	55	63	anti-parallel
Strand 3	A	69	77	anti-parallel
Strand 4	A	114	118	anti-parallel
Strand 5	A	86	92	parallel
Strand 6	A	174	184	parallel
Strand 7	A	203	207	parallel
Strand 8	A	265	271	parallel
Strand 9	A	293	298	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	55	63	anti-parallel
Strand 3	B	69	77	anti-parallel
Strand 4	B	114	118	anti-parallel
Strand 5	B	86	92	parallel
Strand 6	B	174	184	parallel
Strand 7	B	203	207	parallel
Strand 8	B	265	271	parallel
Strand 9	B	293	298	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	55	63	anti-parallel
Strand 3	C	69	77	anti-parallel
Strand 4	C	114	118	anti-parallel
Strand 5	C	86	92	parallel
Strand 6	C	174	184	parallel
Strand 7	C	203	207	parallel
Strand 8	C	265	271	parallel
Strand 9	C	293	298	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	55	63	anti-parallel
Strand 3	D	69	77	anti-parallel
Strand 4	D	114	118	anti-parallel
Strand 5	D	86	92	parallel
Strand 6	D	174	184	parallel
Strand 7	D	203	207	parallel
Strand 8	D	265	271	parallel
Strand 9	D	293	298	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	55	63	anti-parallel
Strand 3	E	69	77	anti-parallel
Strand 4	E	114	118	anti-parallel
Strand 5	E	86	92	parallel
Strand 6	E	174	184	parallel
Strand 7	E	203	207	parallel
Strand 8	E	265	271	parallel
Strand 9	E	293	298	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	63	first strand
Strand 2	F	69	77	anti-parallel
Strand 3	F	114	118	anti-parallel
Strand 4	F	86	91	parallel
Strand 5	F	174	184	parallel
Strand 6	F	203	207	parallel
Strand 7	F	265	271	parallel
Strand 8	F	293	298	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGQ