Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGS entry

There is 1 chain in PDB entry 6AGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8SER 564
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 6AGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 22Right-handed alpha
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
33 40Right-handed alpha
Helix 4
AA4
A
52 66Right-handed alpha
Helix 5
AA5
A
69 82Right-handed alpha
Helix 6
AA6
A
84 94Right-handed alpha
Helix 7
AA7
A
95 104Right-handed alpha
Helix 8
AA8
A
106 114Right-handed alpha
Helix 9
AA9
A
114 119Right-handed alpha
Helix 10
AB1
A
130 132Right-handed 310
Helix 11
AB2
A
134 141Right-handed alpha
Helix 12
AB3
A
164 168Right-handed 310
Helix 13
AB4
A
169 184Right-handed alpha
Helix 14
AB5
A
186 188Right-handed 310
Helix 15
AB6
A
201 206Right-handed alpha
Helix 16
AB7
A
219 238Right-handed alpha
Helix 17
AB8
A
249 261Right-handed alpha
Helix 18
AB9
A
271 289Right-handed alpha
Helix 19
AC1
A
304 320Right-handed alpha
Helix 20
AC2
A
324 331Right-handed alpha
Helix 21
AC3
A
349 354Right-handed alpha
Helix 22
AC4
A
358 363Right-handed 310
Helix 23
AC5
A
373 382Right-handed alpha
Helix 24
AC6
A
397 406Right-handed alpha
Helix 25
AC7
A
419 423Right-handed 310
Helix 26
AC8
A
426 433Right-handed alpha
Helix 27
AC9
A
462 465Right-handed 310
Helix 28
AD1
A
466 478Right-handed alpha
Helix 29
AD2
A
483 497Right-handed alpha
Helix 30
AD3
A
498 503Right-handed alpha
Helix 31
AD4
A
511 513Right-handed 310
Helix 32
AD5
A
514 533Right-handed alpha
Helix 33
AD6
A
540 551Right-handed alpha
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There are 4 sheets in PDB entry 6AGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
560 562parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
190 196parallel
Strand 3
A
149 153parallel
Strand 4
A
242 245parallel
Strand 5
A
266 268parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
298 301parallel
Strand 3
A
385 388parallel
Strand 4
A
412 415parallel
Strand 5
A
439 442parallel
Strand 6
A
459 460parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
454 456anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il