Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGZ entry

There are 2 chains in PDB entry 6AGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8ALA 405
B
 PRO 8ALA 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6AGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
46 58Right-handed alpha
Helix 3
AA3
A
72 76Right-handed 310
Helix 4
AA4
A
86 103Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
119 126Right-handed alpha
Helix 7
AA7
A
139 149Right-handed alpha
Helix 8
AA8
A
157 177Right-handed alpha
Helix 9
AA9
A
192 199Right-handed alpha
Helix 10
AB1
A
212 217Right-handed alpha
Helix 11
AB2
A
217 232Right-handed alpha
Helix 12
AB3
A
245 249Right-handed 310
Helix 13
AB4
A
250 254Right-handed 310
Helix 14
AB5
A
257 275Right-handed alpha
Helix 15
AB6
A
302 309Right-handed alpha
Helix 16
AB7
A
327 335Right-handed alpha
Helix 17
AB8
A
343 349Right-handed alpha
Helix 18
AB9
A
351 359Right-handed alpha
Helix 19
AC1
A
366 370Right-handed 310
Helix 20
AC2
A
394 399Right-handed alpha
Helix 21
AC3
B
12 16Right-handed 310
Helix 22
AC4
B
46 58Right-handed alpha
Helix 23
AC5
B
72 76Right-handed 310
Helix 24
AC6
B
86 103Right-handed alpha
Helix 25
AC7
B
114 118Right-handed 310
Helix 26
AC8
B
119 126Right-handed alpha
Helix 27
AC9
B
139 149Right-handed alpha
Helix 28
AD1
B
157 178Right-handed alpha
Helix 29
AD2
B
192 199Right-handed alpha
Helix 30
AD3
B
212 217Right-handed alpha
Helix 31
AD4
B
217 232Right-handed alpha
Helix 32
AD5
B
245 249Right-handed 310
Helix 33
AD6
B
250 254Right-handed 310
Helix 34
AD7
B
257 275Right-handed alpha
Helix 35
AD8
B
302 309Right-handed alpha
Helix 36
AD9
B
324 334Right-handed alpha
Helix 37
AE1
B
343 349Right-handed alpha
Helix 38
AE2
B
351 359Right-handed alpha
Helix 39
AE3
B
366 370Right-handed 310
Helix 40
AE4
B
394 399Right-handed alpha
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There are 6 sheets in PDB entry 6AGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
23 25anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
106 112parallel
Strand 3
A
183 187parallel
Strand 4
A
236 240parallel
Strand 5
A
281 285parallel
Strand 6
A
313 316parallel
Strand 7
A
338 341parallel
Strand 8
A
29 31parallel
Strand 9
A
63 65parallel
Strand 10
A
106 112parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
153 155parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
23 25anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
63 70parallel
Strand 3
B
106 112parallel
Strand 4
B
183 187parallel
Strand 5
B
236 240parallel
Strand 6
B
281 285parallel
Strand 7
B
313 316parallel
Strand 8
B
338 341parallel
Strand 9
B
29 31parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
153 155parallel
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