Analysis of interatomic Contacts of Structural Units in PDB entry:
6AH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AH3 entry

There are 12 chains in PDB entry 6AH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	C 369
B	GLY 54	VAL 875
C	LYS 14	ILE 188
D	ASP 77	ASN 279
E	VAL 2	SER 147
F	ILE 2	GLN 158
G	LYS 13	VAL 140
H	LYS 3	ILE 133
I	MET 1	SER 242
J	MET 1	PRO 293
K	ASN 17	SER 144
T	A -3	U 76

There are 90 helices in PDB entry 6AH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	58	84	Right-handed alpha
Helix 2	AA2	B	88	92	Right-handed 310
Helix 3	AA3	B	98	102	Right-handed 310
Helix 4	AA4	B	104	108	Right-handed 310
Helix 5	AA5	B	109	124	Right-handed alpha
Helix 6	AA6	B	145	166	Right-handed alpha
Helix 7	AA7	B	171	177	Right-handed alpha
Helix 8	AA8	B	181	198	Right-handed alpha
Helix 9	AA9	B	231	235	Right-handed 310
Helix 10	AB1	B	242	249	Right-handed alpha
Helix 11	AB2	B	268	276	Right-handed alpha
Helix 12	AB3	B	307	318	Right-handed alpha
Helix 13	AB4	B	324	330	Right-handed alpha
Helix 14	AB5	B	371	385	Right-handed alpha
Helix 15	AB6	B	407	416	Right-handed alpha
Helix 16	AB7	B	422	435	Right-handed alpha
Helix 17	AB8	B	452	456	Right-handed 310
Helix 18	AB9	B	465	469	Right-handed 310
Helix 19	AC1	B	471	481	Right-handed alpha
Helix 20	AC2	B	483	496	Right-handed alpha
Helix 21	AC3	B	496	504	Right-handed alpha
Helix 22	AC4	B	505	507	Right-handed 310
Helix 23	AC5	B	509	524	Right-handed alpha
Helix 24	AC6	B	564	571	Right-handed alpha
Helix 25	AC7	B	582	593	Right-handed alpha
Helix 26	AC8	B	597	602	Right-handed alpha
Helix 27	AC9	B	605	627	Right-handed alpha
Helix 28	AD1	B	660	678	Right-handed alpha
Helix 29	AD2	B	702	718	Right-handed alpha
Helix 30	AD3	B	788	798	Right-handed alpha
Helix 31	AD4	B	816	818	Right-handed 310
Helix 32	AD5	B	844	850	Right-handed alpha
Helix 33	AD6	C	27	32	Right-handed alpha
Helix 34	AD7	C	39	42	Right-handed 310
Helix 35	AD8	C	43	57	Right-handed alpha
Helix 36	AD9	C	58	64	Right-handed alpha
Helix 37	AE1	C	71	80	Right-handed alpha
Helix 38	AE2	C	101	106	Right-handed alpha
Helix 39	AE3	C	107	112	Right-handed alpha
Helix 40	AE4	C	130	136	Right-handed alpha
Helix 41	AE5	C	150	158	Right-handed alpha
Helix 42	AE6	D	78	82	Right-handed alpha
Helix 43	AE7	D	84	111	Right-handed alpha
Helix 44	AE8	D	114	126	Right-handed alpha
Helix 45	AE9	D	126	131	Right-handed alpha
Helix 46	AF1	D	135	155	Right-handed alpha
Helix 47	AF2	D	165	176	Right-handed alpha
Helix 48	AF3	D	256	263	Right-handed alpha
Helix 49	AF4	D	270	273	Right-handed 310
Helix 50	AF5	D	274	279	Right-handed alpha
Helix 51	AF6	E	27	36	Right-handed alpha
Helix 52	AF7	E	44	61	Right-handed alpha
Helix 53	AF8	E	62	69	Right-handed alpha
Helix 54	AF9	E	92	102	Right-handed alpha
Helix 55	AG1	E	123	147	Right-handed alpha
Helix 56	AG2	F	18	29	Right-handed alpha
Helix 57	AG3	F	54	66	Right-handed alpha
Helix 58	AG4	F	87	101	Right-handed alpha
Helix 59	AG5	F	102	106	Right-handed 310
Helix 60	AG6	G	40	59	Right-handed alpha
Helix 61	AG7	G	71	83	Right-handed alpha
Helix 62	AG8	H	20	27	Right-handed alpha
Helix 63	AG9	H	30	45	Right-handed alpha
Helix 64	AH1	H	47	52	Right-handed alpha
Helix 65	AH2	H	73	82	Right-handed alpha
Helix 66	AH3	H	114	133	Right-handed alpha
Helix 67	AH4	I	19	37	Right-handed alpha
Helix 68	AH5	I	68	77	Right-handed alpha
Helix 69	AH6	I	99	104	Right-handed alpha
Helix 70	AH7	I	113	123	Right-handed alpha
Helix 71	AH8	I	142	151	Right-handed alpha
Helix 72	AH9	I	161	165	Right-handed 310
Helix 73	AI1	I	167	185	Right-handed alpha
Helix 74	AI2	I	197	201	Right-handed 310
Helix 75	AI3	I	203	215	Right-handed alpha
Helix 76	AI4	I	217	242	Right-handed alpha
Helix 77	AI5	J	19	36	Right-handed alpha
Helix 78	AI6	J	68	77	Right-handed alpha
Helix 79	AI7	J	96	104	Right-handed alpha
Helix 80	AI8	J	113	123	Right-handed alpha
Helix 81	AI9	J	142	153	Right-handed alpha
Helix 82	AJ1	J	161	165	Right-handed 310
Helix 83	AJ2	J	168	185	Right-handed alpha
Helix 84	AJ3	J	197	201	Right-handed 310
Helix 85	AJ4	J	203	215	Right-handed alpha
Helix 86	AJ5	J	217	227	Right-handed alpha
Helix 87	AJ6	J	227	241	Right-handed alpha
Helix 88	AJ7	K	27	55	Right-handed alpha
Helix 89	AJ8	K	59	77	Right-handed alpha
Helix 90	AJ9	K	82	89	Right-handed alpha

There are 16 sheets in PDB entry 6AH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	390	394	anti-parallel
Strand 3	B	294	299	anti-parallel
Strand 4	B	366	370	anti-parallel
Strand 5	B	351	360	anti-parallel
Strand 6	B	334	340	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	261	264	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	450	first strand
Strand 2	B	543	550	anti-parallel
Strand 3	B	555	560	anti-parallel
Strand 4	B	399	404	anti-parallel
Strand 5	B	286	290	anti-parallel
Strand 6	B	579	580	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	827	830	first strand
Strand 2	B	835	843	anti-parallel
Strand 3	B	820	824	anti-parallel
Strand 4	B	779	782	anti-parallel
Strand 5	B	854	858	anti-parallel
Strand 6	B	866	872	anti-parallel
Strand 7	B	762	769	anti-parallel
Strand 8	B	835	843	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	19	first strand
Strand 2	C	15	23	parallel
Strand 3	C	179	187	anti-parallel
Strand 4	K	141	142	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	140	144	anti-parallel
Strand 3	C	88	94	anti-parallel
Strand 4	C	118	124	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	182	188	anti-parallel
Strand 3	D	228	235	anti-parallel
Strand 4	D	243	249	anti-parallel
Strand 5	J	247	248	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	211	first strand
Strand 2	D	220	224	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	78	first strand
Strand 2	E	83	89	anti-parallel
Strand 3	E	6	14	anti-parallel
Strand 4	E	113	120	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	4	7	anti-parallel
Strand 3	F	110	123	anti-parallel
Strand 4	F	130	143	anti-parallel
Strand 5	F	76	84	anti-parallel
Strand 6	F	42	48	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	4	7	anti-parallel
Strand 3	F	110	123	anti-parallel
Strand 4	F	156	157	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	90	104	anti-parallel
Strand 3	G	124	139	anti-parallel
Strand 4	G	62	68	anti-parallel
Strand 5	G	32	34	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	61	first strand
Strand 2	H	64	70	anti-parallel
Strand 3	H	9	17	anti-parallel
Strand 4	H	96	103	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	8	first strand
Strand 2	I	40	48	parallel
Strand 3	I	79	88	parallel
Strand 4	I	106	111	parallel
Strand 5	I	128	130	parallel
Strand 6	I	155	159	parallel
Strand 7	I	189	192	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	8	first strand
Strand 2	J	40	48	parallel
Strand 3	J	80	88	parallel
Strand 4	J	106	111	parallel
Strand 5	J	128	130	parallel
Strand 6	J	155	159	parallel
Strand 7	J	189	192	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	105	first strand
Strand 2	K	111	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AH3