Analysis of interatomic Contacts of Structural Units in PDB entry:
6AI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AI8 entry

There are 2 chains in PDB entry 6AI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 38THR 360
B
 GLU 40THR 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6AI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 47Right-handed alpha
Helix 2
AA2
A
52 70Right-handed alpha
Helix 3
AA3
A
101 114Right-handed alpha
Helix 4
AA4
A
131 136Right-handed alpha
Helix 5
AA5
A
141 146Right-handed 310
Helix 6
AA6
A
153 172Right-handed alpha
Helix 7
AA7
A
184 198Right-handed alpha
Helix 8
AA8
A
218 222Right-handed 310
Helix 9
AA9
A
263 270Right-handed alpha
Helix 10
AB1
A
285 287Right-handed 310
Helix 11
AB2
A
288 301Right-handed alpha
Helix 12
AB3
A
311 313Right-handed 310
Helix 13
AB4
A
338 358Right-handed alpha
Helix 14
AB5
B
41 47Right-handed alpha
Helix 15
AB6
B
52 70Right-handed alpha
Helix 16
AB7
B
101 114Right-handed alpha
Helix 17
AB8
B
141 145Right-handed 310
Helix 18
AB9
B
153 172Right-handed alpha
Helix 19
AC1
B
184 197Right-handed alpha
Helix 20
AC2
B
198 200Right-handed 310
Helix 21
AC3
B
218 222Right-handed 310
Helix 22
AC4
B
263 270Right-handed alpha
Helix 23
AC5
B
287 301Right-handed alpha
Helix 24
AC6
B
338 358Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6AI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 182first strand
Strand 2
A
117 123parallel
Strand 3
A
75 80parallel
Strand 4
A
204 208parallel
Strand 5
A
276 283parallel
Strand 6
A
304 309parallel
Strand 7
A
316 320anti-parallel
Strand 8
A
328 331anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
93 97anti-parallel
Strand 3
B
93 97anti-parallel
Strand 4
B
84 86anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
253 259anti-parallel
Strand 3
B
253 259anti-parallel
Strand 4
B
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
253 259anti-parallel
Strand 3
B
253 259anti-parallel
Strand 4
B
245 247anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 182first strand
Strand 2
B
117 123parallel
Strand 3
B
75 80parallel
Strand 4
B
204 208parallel
Strand 5
B
276 283parallel
Strand 6
B
304 309parallel
Strand 7
B
316 320anti-parallel
Strand 8
B
328 331anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il