Analysis of interatomic Contacts of Structural Units in PDB entry:
6AIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AIG entry

There is 1 chain in PDB entry 6AIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5THR 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6AIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 34Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
88 96Right-handed alpha
Helix 4
AA4
A
152 166Right-handed alpha
Helix 5
AA5
A
216 223Right-handed alpha
Helix 6
AA6
A
224 229Right-handed 310
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There are 3 sheets in PDB entry 6AIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
112 118anti-parallel
Strand 5
A
122 128anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 87first strand
Strand 2
A
38 44anti-parallel
Strand 3
A
47 53anti-parallel
Strand 4
A
59 66anti-parallel
Strand 5
A
253 258anti-parallel
Strand 6
A
242 247anti-parallel
Strand 7
A
231 236anti-parallel
Strand 8
A
146 151anti-parallel
Strand 9
A
201 206anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
210 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il