Analysis of interatomic Contacts of Structural Units in PDB entry:
6AII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AII entry

There is 1 chain in PDB entry 6AII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 93HIS 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6AII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 120Right-handed 310
Helix 2
AA2
A
253 257Right-handed 310
Helix 3
AA3
A
258 263Right-handed alpha
Helix 4
AA4
A
286 290Right-handed 310
Helix 5
AA5
A
381 387Right-handed alpha
Helix 6
AA6
A
392 399Right-handed alpha
Helix 7
AA7
A
400 402Right-handed 310
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There are 6 sheets in PDB entry 6AII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
404 417anti-parallel
Strand 3
A
167 171anti-parallel
Strand 4
A
161 164anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
404 417anti-parallel
Strand 3
A
210 217anti-parallel
Strand 4
A
309 317anti-parallel
Strand 5
A
320 325anti-parallel
Strand 6
A
328 334anti-parallel
Strand 7
A
337 341anti-parallel
Strand 8
A
347 351anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
140 141anti-parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
372 379anti-parallel
Strand 5
A
224 231anti-parallel
Strand 6
A
236 243anti-parallel
Strand 7
A
265 273anti-parallel
Strand 8
A
281 283anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
140 141anti-parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
372 379anti-parallel
Strand 5
A
224 231anti-parallel
Strand 6
A
236 243anti-parallel
Strand 7
A
265 273anti-parallel
Strand 8
A
295 296anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
195 197parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
189 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il