Analysis of interatomic Contacts of Structural Units in PDB entry:
6AIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AIJ entry

There is 1 chain in PDB entry 6AIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ASN 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6AIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
53 63Right-handed alpha
Helix 5
AA5
A
64 69Right-handed alpha
Helix 6
AA6
A
114 128Right-handed alpha
Helix 7
AA7
A
185 191Right-handed alpha
Helix 8
AA8
A
204 221Right-handed alpha
Helix 9
AA9
A
230 234Right-handed 310
Helix 10
AB1
A
235 248Right-handed alpha
Helix 11
AB2
A
267 277Right-handed alpha
Helix 12
AB3
A
283 295Right-handed alpha
Helix 13
AB4
A
300 315Right-handed alpha
Helix 14
AB5
A
317 320Right-handed 310
Helix 15
AB6
A
340 353Right-handed alpha
Helix 16
AB7
A
362 366Right-handed 310
Helix 17
AB8
A
373 377Right-handed 310
Helix 18
AB9
A
386 396Right-handed alpha
Helix 19
AC1
A
397 402Right-handed alpha
Helix 20
AC2
A
402 408Right-handed alpha
Helix 21
AC3
A
538 540Right-handed 310
Helix 22
AC4
A
611 615Right-handed 310
Helix 23
AC5
A
618 622Right-handed 310
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There are 14 sheets in PDB entry 6AIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
254 257parallel
Strand 3
A
225 228parallel
Strand 4
A
131 136parallel
Strand 5
A
73 76parallel
Strand 6
A
17 20parallel
Strand 7
A
356 360parallel
Strand 8
A
322 323parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
102 108anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
92 94anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
197 199anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
162 165anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 415first strand
Strand 2
A
419 426anti-parallel
Strand 3
A
429 436anti-parallel
Strand 4
A
488 493anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 445first strand
Strand 2
A
481 483anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
477 478anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 457first strand
Strand 2
A
470 472anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 506first strand
Strand 2
A
515 521anti-parallel
Strand 3
A
549 553anti-parallel
Strand 4
A
542 545anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 510first strand
Strand 2
A
577 582parallel
Strand 3
A
560 567anti-parallel
Strand 4
A
529 532anti-parallel
Strand 5
A
535 537anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 644first strand
Strand 2
A
587 595anti-parallel
Strand 3
A
678 684parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 609first strand
Strand 2
A
648 657anti-parallel
Strand 3
A
661 663anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 609first strand
Strand 2
A
648 657anti-parallel
Strand 3
A
669 672anti-parallel
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