Analysis of interatomic Contacts of Structural Units in PDB entry:
6AIS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AIS entry

There is 1 chain in PDB entry 6AIS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 ASN 28LYS 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 6AIS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
205 208Right-handed 310
Helix 2
AA2
O
262 270Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6AIS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
30 34first strand
Strand 2
O
38 42anti-parallel
Strand 3
O
52 58anti-parallel
Strand 4
O
61 67anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
74 79first strand
Strand 2
O
85 90anti-parallel
Strand 3
O
97 102anti-parallel
Strand 4
O
109 115anti-parallel
Strand 5
O
121 126anti-parallel
Strand 6
O
132 138anti-parallel
Strand 7
O
144 148anti-parallel
Strand 8
O
156 161anti-parallel
Strand 9
O
166 171anti-parallel
Strand 10
O
175 182anti-parallel
Strand 11
O
185 192anti-parallel
Strand 12
O
197 203anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
210 215first strand
Strand 2
O
220 225anti-parallel
Strand 3
O
228 235anti-parallel
Strand 4
O
241 245anti-parallel
Strand 5
O
258 259anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il