Analysis of interatomic Contacts of Structural Units in PDB entry:
6AIT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AIT entry

There are 4 chains in PDB entry 6AIT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 45	LYS 482
B	GLY 44	LYS 482
C	GLY 44	LYS 482
D	SER 45	ARG 61

There are136 helices in PDB entry 6AIT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	64	Right-handed alpha
Helix 2	AA2	A	69	85	Right-handed alpha
Helix 3	AA3	A	119	124	Right-handed alpha
Helix 4	AA4	A	126	143	Right-handed alpha
Helix 5	AA5	A	144	151	Right-handed alpha
Helix 6	AA6	A	161	174	Right-handed alpha
Helix 7	AA7	A	197	215	Right-handed alpha
Helix 8	AA8	A	220	236	Right-handed alpha
Helix 9	AA9	A	241	246	Right-handed alpha
Helix 10	AB1	A	249	263	Right-handed alpha
Helix 11	AB2	A	271	285	Right-handed alpha
Helix 12	AB3	A	293	303	Right-handed alpha
Helix 13	AB4	A	304	322	Right-handed alpha
Helix 14	AB5	A	324	339	Right-handed alpha
Helix 15	AB6	A	342	356	Right-handed alpha
Helix 16	AB7	A	358	368	Right-handed alpha
Helix 17	AB8	A	369	373	Right-handed 310
Helix 18	AB9	A	375	389	Right-handed alpha
Helix 19	AC1	A	391	406	Right-handed alpha
Helix 20	AC2	A	409	423	Right-handed alpha
Helix 21	AC3	A	425	440	Right-handed alpha
Helix 22	AC4	A	442	455	Right-handed alpha
Helix 23	AC5	A	461	480	Right-handed alpha
Helix 24	AC6	B	45	64	Right-handed alpha
Helix 25	AC7	B	69	85	Right-handed alpha
Helix 26	AC8	B	119	124	Right-handed alpha
Helix 27	AC9	B	126	143	Right-handed alpha
Helix 28	AD1	B	144	151	Right-handed alpha
Helix 29	AD2	B	161	174	Right-handed alpha
Helix 30	AD3	B	197	215	Right-handed alpha
Helix 31	AD4	B	220	231	Right-handed alpha
Helix 32	AD5	B	241	246	Right-handed alpha
Helix 33	AD6	B	249	263	Right-handed alpha
Helix 34	AD7	B	271	285	Right-handed alpha
Helix 35	AD8	B	293	301	Right-handed alpha
Helix 36	AD9	B	304	322	Right-handed alpha
Helix 37	AE1	B	324	339	Right-handed alpha
Helix 38	AE2	B	342	356	Right-handed alpha
Helix 39	AE3	B	358	368	Right-handed alpha
Helix 40	AE4	B	369	373	Right-handed 310
Helix 41	AE5	B	375	390	Right-handed alpha
Helix 42	AE6	B	391	406	Right-handed alpha
Helix 43	AE7	B	409	423	Right-handed alpha
Helix 44	AE8	B	425	440	Right-handed alpha
Helix 45	AE9	B	442	455	Right-handed alpha
Helix 46	AF1	B	461	481	Right-handed alpha
Helix 47	AF2	C	45	64	Right-handed alpha
Helix 48	AF3	C	69	85	Right-handed alpha
Helix 49	AF4	C	119	124	Right-handed alpha
Helix 50	AF5	C	126	143	Right-handed alpha
Helix 51	AF6	C	144	153	Right-handed alpha
Helix 52	AF7	C	162	174	Right-handed alpha
Helix 53	AF8	C	197	215	Right-handed alpha
Helix 54	AF9	C	220	236	Right-handed alpha
Helix 55	AG1	C	241	246	Right-handed alpha
Helix 56	AG2	C	249	263	Right-handed alpha
Helix 57	AG3	C	271	285	Right-handed alpha
Helix 58	AG4	C	293	301	Right-handed alpha
Helix 59	AG5	C	304	322	Right-handed alpha
Helix 60	AG6	C	324	339	Right-handed alpha
Helix 61	AG7	C	342	356	Right-handed alpha
Helix 62	AG8	C	358	368	Right-handed alpha
Helix 63	AG9	C	369	374	Right-handed 310
Helix 64	AH1	C	375	389	Right-handed alpha
Helix 65	AH2	C	391	406	Right-handed alpha
Helix 66	AH3	C	409	423	Right-handed alpha
Helix 67	AH4	C	425	440	Right-handed alpha
Helix 68	AH5	C	442	456	Right-handed alpha
Helix 69	AH6	C	461	480	Right-handed alpha
Helix 70	AH7	D	46	64	Right-handed alpha
Helix 71	AH8	D	69	85	Right-handed alpha
Helix 72	AH9	D	119	124	Right-handed alpha
Helix 73	AI1	D	126	143	Right-handed alpha
Helix 74	AI2	D	144	150	Right-handed alpha
Helix 75	AI3	D	161	174	Right-handed alpha
Helix 76	AI4	D	197	215	Right-handed alpha
Helix 77	AI5	D	220	234	Right-handed alpha
Helix 78	AI6	D	241	246	Right-handed alpha
Helix 79	AI7	D	249	263	Right-handed alpha
Helix 80	AI8	D	271	285	Right-handed alpha
Helix 81	AI9	D	287	291	Right-handed 310
Helix 82	AJ1	D	293	301	Right-handed alpha
Helix 83	AJ2	D	304	322	Right-handed alpha
Helix 84	AJ3	D	324	339	Right-handed alpha
Helix 85	AJ4	D	342	356	Right-handed alpha
Helix 86	AJ5	D	358	368	Right-handed alpha
Helix 87	AJ6	D	375	389	Right-handed alpha
Helix 88	AJ7	D	391	406	Right-handed alpha
Helix 89	AJ8	D	409	423	Right-handed alpha
Helix 90	AJ9	D	425	440	Right-handed alpha
Helix 91	AK1	D	442	456	Right-handed alpha
Helix 92	AK2	D	461	480	Right-handed alpha
Helix 93	AK3	E	47	64	Right-handed alpha
Helix 94	AK4	E	69	85	Right-handed alpha
Helix 95	AK5	E	118	124	Right-handed alpha
Helix 96	AK6	E	126	143	Right-handed alpha
Helix 97	AK7	E	144	152	Right-handed alpha
Helix 98	AK8	E	161	174	Right-handed alpha
Helix 99	AK9	E	197	215	Right-handed alpha
Helix 100	AL1	E	220	235	Right-handed alpha
Helix 101	AL2	E	241	246	Right-handed alpha
Helix 102	AL3	E	249	263	Right-handed alpha
Helix 103	AL4	E	271	285	Right-handed alpha
Helix 104	AL5	E	293	301	Right-handed alpha
Helix 105	AL6	E	304	322	Right-handed alpha
Helix 106	AL7	E	324	339	Right-handed alpha
Helix 107	AL8	E	342	356	Right-handed alpha
Helix 108	AL9	E	358	368	Right-handed alpha
Helix 109	AM1	E	375	389	Right-handed alpha
Helix 110	AM2	E	391	406	Right-handed alpha
Helix 111	AM3	E	409	423	Right-handed alpha
Helix 112	AM4	E	425	440	Right-handed alpha
Helix 113	AM5	E	442	455	Right-handed alpha
Helix 114	AM6	E	461	481	Right-handed alpha
Helix 115	AM7	F	46	64	Right-handed alpha
Helix 116	AM8	F	69	85	Right-handed alpha
Helix 117	AM9	F	119	124	Right-handed alpha
Helix 118	AN1	F	126	143	Right-handed alpha
Helix 119	AN2	F	144	151	Right-handed alpha
Helix 120	AN3	F	161	174	Right-handed alpha
Helix 121	AN4	F	197	215	Right-handed alpha
Helix 122	AN5	F	220	231	Right-handed alpha
Helix 123	AN6	F	242	246	Right-handed alpha
Helix 124	AN7	F	251	264	Right-handed alpha
Helix 125	AN8	F	271	285	Right-handed alpha
Helix 126	AN9	F	293	301	Right-handed alpha
Helix 127	AO1	F	304	322	Right-handed alpha
Helix 128	AO2	F	324	339	Right-handed alpha
Helix 129	AO3	F	342	356	Right-handed alpha
Helix 130	AO4	F	358	368	Right-handed alpha
Helix 131	AO5	F	375	389	Right-handed alpha
Helix 132	AO6	F	391	406	Right-handed alpha
Helix 133	AO7	F	409	423	Right-handed alpha
Helix 134	AO8	F	425	440	Right-handed alpha
Helix 135	AO9	F	442	456	Right-handed alpha
Helix 136	AP1	F	461	481	Right-handed alpha

There are 6 sheets in PDB entry 6AIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	99	first strand
Strand 2	A	113	117	parallel
Strand 3	A	106	109	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	113	117	parallel
Strand 3	B	106	109	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	99	first strand
Strand 2	C	113	117	parallel
Strand 3	C	106	109	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	99	first strand
Strand 2	D	113	117	parallel
Strand 3	D	106	109	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	99	first strand
Strand 2	E	113	117	parallel
Strand 3	E	106	109	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	99	first strand
Strand 2	F	113	117	parallel
Strand 3	F	106	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AIT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AIT