Analysis of interatomic Contacts of Structural Units in PDB entry:
6AIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AIY entry

There is 1 chain in PDB entry 6AIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 27GLN 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6AIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 37Right-handed 310
Helix 2
AA2
A
103 114Right-handed alpha
Helix 3
AA3
A
123 126Right-handed 310
Helix 4
AA4
A
132 141Right-handed alpha
Helix 5
AA5
A
142 144Right-handed 310
Helix 6
AA6
A
167 176Right-handed alpha
Helix 7
AA7
A
178 195Right-handed alpha
Helix 8
AA8
A
262 283Right-handed alpha
Helix 9
AA9
A
309 316Right-handed 310
Helix 10
AB1
A
323 342Right-handed alpha
Helix 11
AB2
A
375 384Right-handed alpha
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There are 4 sheets in PDB entry 6AIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
361 367anti-parallel
Strand 3
A
349 355anti-parallel
Strand 4
A
149 156anti-parallel
Strand 5
A
159 165anti-parallel
Strand 6
A
128 131parallel
Strand 7
A
227 234parallel
Strand 8
A
215 224anti-parallel
Strand 9
A
43 54anti-parallel
Strand 10
A
60 61anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
196 197anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
299 307anti-parallel
Strand 3
A
288 294anti-parallel
Strand 4
A
251 258parallel
Strand 5
A
237 238anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
210 211parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il