Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AJ2 entry

There are 3 chains in PDB entry 6AJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 42TYR 267
B
 LEU 16ILE 246
C
 GLY 1GLN 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6AJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 58Right-handed 310
Helix 2
AA2
A
100 108Right-handed alpha
Helix 3
AA3
A
212 216Right-handed 310
Helix 4
AA4
B
81 86Right-handed alpha
Helix 5
AA5
B
89 97Right-handed alpha
Helix 6
AA6
B
166 173Right-handed 310
Helix 7
AA7
C
43 48Right-handed alpha
Helix 8
AA8
C
63 68Right-handed 310
Helix 9
AA9
C
98 103Right-handed alpha
Helix 10
AB1
C
144 149Right-handed alpha
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There are 11 sheets in PDB entry 6AJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 76first strand
Strand 2
A
233 241anti-parallel
Strand 3
A
119 124anti-parallel
Strand 4
A
180 182anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
143 148anti-parallel
Strand 4
A
172 173anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
112 116anti-parallel
Strand 3
A
244 249anti-parallel
Strand 4
C
39 40anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
21 22anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
185 190parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
227 234anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
185 190parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
227 234anti-parallel
Strand 5
B
69 70anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
207 215anti-parallel
Strand 3
B
121 128anti-parallel
Strand 4
B
175 176anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
238 239anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
212 218anti-parallel
Strand 3
C
108 119anti-parallel
Strand 4
C
162 170anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
212 218anti-parallel
Strand 3
C
108 119anti-parallel
Strand 4
C
223 225anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
128 134anti-parallel
Strand 4
C
152 156anti-parallel
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