Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AJ3 entry

There are 3 chains in PDB entry 6AJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 54TYR 267
B
 PHE 63GLU 238
C
 GLY 1GLY 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6AJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 63Right-handed alpha
Helix 2
AA2
A
100 108Right-handed alpha
Helix 3
AA3
B
82 86Right-handed alpha
Helix 4
AA4
B
142 147Right-handed alpha
Helix 5
AA5
B
157 161Right-handed 310
Helix 6
AA6
B
169 173Right-handed 310
Helix 7
AA7
C
43 48Right-handed alpha
Helix 8
AA8
C
97 103Right-handed alpha
Helix 9
AA9
C
143 148Right-handed alpha
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There are 9 sheets in PDB entry 6AJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 71first strand
Strand 2
A
235 241anti-parallel
Strand 3
A
119 125anti-parallel
Strand 4
A
180 182anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
218 224anti-parallel
Strand 3
A
142 149anti-parallel
Strand 4
A
170 174anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
110 116anti-parallel
Strand 3
A
244 251anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
185 190anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
207 211anti-parallel
Strand 3
B
124 128anti-parallel
Strand 4
B
175 176anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
210 218anti-parallel
Strand 3
C
69 71anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
210 218anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
162 166anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 85first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
127 134anti-parallel
Strand 4
C
151 157anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 110first strand
Strand 2
C
223 224anti-parallel
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