Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AJ5 entry

There are 4 chains in PDB entry 6AJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	PRO 402
B	ASP 18	PRO 402
C	ASP 18	PRO 402
D	ASP 18	GLU 213

There are 54 helices in PDB entry 6AJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	32	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	71	78	Right-handed alpha
Helix 4	AA4	A	105	107	Right-handed 310
Helix 5	AA5	A	120	135	Right-handed alpha
Helix 6	AA6	A	137	141	Right-handed 310
Helix 7	AA7	A	159	169	Right-handed alpha
Helix 8	AA8	A	189	193	Right-handed 310
Helix 9	AA9	A	194	210	Right-handed alpha
Helix 10	AB1	A	267	282	Right-handed alpha
Helix 11	AB2	A	315	328	Right-handed alpha
Helix 12	AB3	A	344	355	Right-handed alpha
Helix 13	AB4	A	362	368	Right-handed alpha
Helix 14	AB5	A	371	388	Right-handed alpha
Helix 15	AB6	A	392	396	Right-handed 310
Helix 16	AB7	B	19	32	Right-handed alpha
Helix 17	AB8	B	71	78	Right-handed alpha
Helix 18	AB9	B	120	138	Right-handed alpha
Helix 19	AC1	B	158	169	Right-handed alpha
Helix 20	AC2	B	196	210	Right-handed alpha
Helix 21	AC3	B	267	282	Right-handed alpha
Helix 22	AC4	B	302	306	Right-handed 310
Helix 23	AC5	B	313	328	Right-handed alpha
Helix 24	AC6	B	344	354	Right-handed alpha
Helix 25	AC7	B	362	369	Right-handed alpha
Helix 26	AC8	B	371	385	Right-handed alpha
Helix 27	AC9	B	391	396	Right-handed 310
Helix 28	AD1	C	19	33	Right-handed alpha
Helix 29	AD2	C	71	78	Right-handed alpha
Helix 30	AD3	C	105	108	Right-handed 310
Helix 31	AD4	C	120	135	Right-handed alpha
Helix 32	AD5	C	158	171	Right-handed alpha
Helix 33	AD6	C	172	174	Right-handed 310
Helix 34	AD7	C	190	193	Right-handed 310
Helix 35	AD8	C	194	209	Right-handed alpha
Helix 36	AD9	C	243	247	Right-handed 310
Helix 37	AE1	C	267	281	Right-handed alpha
Helix 38	AE2	C	314	331	Right-handed alpha
Helix 39	AE3	C	344	354	Right-handed alpha
Helix 40	AE4	C	362	369	Right-handed alpha
Helix 41	AE5	C	371	388	Right-handed alpha
Helix 42	AE6	D	19	33	Right-handed alpha
Helix 43	AE7	D	43	47	Right-handed 310
Helix 44	AE8	D	71	77	Right-handed alpha
Helix 45	AE9	D	120	138	Right-handed alpha
Helix 46	AF1	D	158	171	Right-handed alpha
Helix 47	AF2	D	189	193	Right-handed 310
Helix 48	AF3	D	194	210	Right-handed alpha
Helix 49	AF4	D	267	282	Right-handed alpha
Helix 50	AF5	D	315	331	Right-handed alpha
Helix 51	AF6	D	344	353	Right-handed alpha
Helix 52	AF7	D	362	366	Right-handed 310
Helix 53	AF8	D	372	387	Right-handed alpha
Helix 54	AF9	D	391	396	Right-handed alpha

There are 11 sheets in PDB entry 6AJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	53	55	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	358	361	parallel
Strand 3	A	335	338	parallel
Strand 4	A	285	287	parallel
Strand 5	A	259	261	parallel
Strand 6	A	176	180	parallel
Strand 7	A	145	150	parallel
Strand 8	A	82	88	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	109	112	anti-parallel
Strand 3	A	309	312	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	82	88	parallel
Strand 3	B	145	150	parallel
Strand 4	B	176	180	parallel
Strand 5	B	257	262	parallel
Strand 6	B	285	288	parallel
Strand 7	B	335	338	parallel
Strand 8	B	358	361	parallel
Strand 9	B	59	61	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	109	112	anti-parallel
Strand 3	B	309	312	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	53	55	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	82	88	parallel
Strand 3	C	145	150	parallel
Strand 4	C	176	180	parallel
Strand 5	C	257	262	parallel
Strand 6	C	285	288	parallel
Strand 7	C	336	338	parallel
Strand 8	C	356	361	parallel
Strand 9	C	59	61	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	109	112	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	53	55	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	358	361	parallel
Strand 3	D	337	338	parallel
Strand 4	D	285	288	parallel
Strand 5	D	257	262	parallel
Strand 6	D	176	180	parallel
Strand 7	D	147	150	parallel
Strand 8	D	84	88	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	104	first strand
Strand 2	D	109	112	anti-parallel
Strand 3	D	309	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJ5