Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AJ8 entry

There are 2 chains in PDB entry 6AJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1VAL 413
B
 SER 1VAL 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6AJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
45 52Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
79 87Right-handed alpha
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
137 141Right-handed 310
Helix 7
AA7
A
185 203Right-handed alpha
Helix 8
AA8
A
217 234Right-handed alpha
Helix 9
AA9
A
234 241Right-handed alpha
Helix 10
AB1
A
250 260Right-handed alpha
Helix 11
AB2
A
269 285Right-handed alpha
Helix 12
AB3
A
286 288Right-handed 310
Helix 13
AB4
A
311 320Right-handed alpha
Helix 14
AB5
A
328 347Right-handed alpha
Helix 15
AB6
A
348 368Right-handed alpha
Helix 16
AB7
A
372 381Right-handed alpha
Helix 17
AB8
A
386 390Right-handed 310
Helix 18
AB9
A
392 409Right-handed alpha
Helix 19
AC1
B
16 31Right-handed alpha
Helix 20
AC2
B
45 52Right-handed alpha
Helix 21
AC3
B
54 68Right-handed alpha
Helix 22
AC4
B
79 86Right-handed alpha
Helix 23
AC5
B
94 104Right-handed alpha
Helix 24
AC6
B
136 141Right-handed 310
Helix 25
AC7
B
185 203Right-handed alpha
Helix 26
AC8
B
217 234Right-handed alpha
Helix 27
AC9
B
234 242Right-handed alpha
Helix 28
AD1
B
250 260Right-handed alpha
Helix 29
AD2
B
269 285Right-handed alpha
Helix 30
AD3
B
286 288Right-handed 310
Helix 31
AD4
B
311 318Right-handed alpha
Helix 32
AD5
B
328 347Right-handed alpha
Helix 33
AD6
B
348 369Right-handed alpha
Helix 34
AD7
B
372 381Right-handed alpha
Helix 35
AD8
B
382 385Right-handed 310
Helix 36
AD9
B
392 409Right-handed alpha
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There are 5 sheets in PDB entry 6AJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
10 14parallel
Strand 3
A
69 72parallel
Strand 4
A
302 306parallel
Strand 5
A
290 295anti-parallel
Strand 6
A
106 111anti-parallel
Strand 7
A
128 132anti-parallel
Strand 8
A
264 268parallel
Strand 9
A
206 210parallel
Strand 10
A
245 249parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 146first strand
Strand 2
A
176 184anti-parallel
Strand 3
B
176 184anti-parallel
Strand 4
B
142 146anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 171first strand
Strand 2
A
150 158anti-parallel
Strand 3
B
150 158anti-parallel
Strand 4
B
165 172anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
35 36parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
10 13parallel
Strand 3
B
69 72parallel
Strand 4
B
302 306parallel
Strand 5
B
290 295anti-parallel
Strand 6
B
106 111anti-parallel
Strand 7
B
128 132anti-parallel
Strand 8
B
264 268parallel
Strand 9
B
206 210parallel
Strand 10
B
245 249parallel
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