Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AJB entry

There are 4 chains in PDB entry 6AJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LYS 410
B	SER 1	SER 411
C	THR 7	VAL 413
D	SER 1	LEU 30

There are 70 helices in PDB entry 6AJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	30	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	54	68	Right-handed alpha
Helix 4	AA4	A	79	87	Right-handed alpha
Helix 5	AA5	A	94	104	Right-handed alpha
Helix 6	AA6	A	137	141	Right-handed 310
Helix 7	AA7	A	185	203	Right-handed alpha
Helix 8	AA8	A	217	234	Right-handed alpha
Helix 9	AA9	A	234	242	Right-handed alpha
Helix 10	AB1	A	250	260	Right-handed alpha
Helix 11	AB2	A	269	285	Right-handed alpha
Helix 12	AB3	A	286	288	Right-handed 310
Helix 13	AB4	A	311	321	Right-handed alpha
Helix 14	AB5	A	328	346	Right-handed alpha
Helix 15	AB6	A	348	369	Right-handed alpha
Helix 16	AB7	A	372	380	Right-handed alpha
Helix 17	AB8	A	386	390	Right-handed 310
Helix 18	AB9	A	392	407	Right-handed alpha
Helix 19	AC1	B	16	31	Right-handed alpha
Helix 20	AC2	B	45	52	Right-handed alpha
Helix 21	AC3	B	55	68	Right-handed alpha
Helix 22	AC4	B	79	86	Right-handed alpha
Helix 23	AC5	B	94	103	Right-handed alpha
Helix 24	AC6	B	136	139	Right-handed 310
Helix 25	AC7	B	185	203	Right-handed alpha
Helix 26	AC8	B	217	234	Right-handed alpha
Helix 27	AC9	B	234	242	Right-handed alpha
Helix 28	AD1	B	250	260	Right-handed alpha
Helix 29	AD2	B	269	285	Right-handed alpha
Helix 30	AD3	B	311	321	Right-handed alpha
Helix 31	AD4	B	328	346	Right-handed alpha
Helix 32	AD5	B	348	368	Right-handed alpha
Helix 33	AD6	B	372	380	Right-handed alpha
Helix 34	AD7	B	381	385	Right-handed 310
Helix 35	AD8	B	386	390	Right-handed 310
Helix 36	AD9	B	392	410	Right-handed alpha
Helix 37	AE1	C	16	31	Right-handed alpha
Helix 38	AE2	C	45	53	Right-handed alpha
Helix 39	AE3	C	54	68	Right-handed alpha
Helix 40	AE4	C	79	87	Right-handed alpha
Helix 41	AE5	C	94	104	Right-handed alpha
Helix 42	AE6	C	185	203	Right-handed alpha
Helix 43	AE7	C	217	234	Right-handed alpha
Helix 44	AE8	C	235	241	Right-handed alpha
Helix 45	AE9	C	250	260	Right-handed alpha
Helix 46	AF1	C	269	285	Right-handed alpha
Helix 47	AF2	C	286	288	Right-handed 310
Helix 48	AF3	C	311	321	Right-handed alpha
Helix 49	AF4	C	328	347	Right-handed alpha
Helix 50	AF5	C	348	368	Right-handed alpha
Helix 51	AF6	C	372	381	Right-handed alpha
Helix 52	AF7	C	386	390	Right-handed 310
Helix 53	AF8	C	392	410	Right-handed alpha
Helix 54	AF9	D	17	30	Right-handed alpha
Helix 55	AG1	D	45	52	Right-handed alpha
Helix 56	AG2	D	55	68	Right-handed alpha
Helix 57	AG3	D	79	86	Right-handed alpha
Helix 58	AG4	D	94	104	Right-handed alpha
Helix 59	AG5	D	136	139	Right-handed 310
Helix 60	AG6	D	185	202	Right-handed alpha
Helix 61	AG7	D	219	234	Right-handed alpha
Helix 62	AG8	D	234	241	Right-handed alpha
Helix 63	AG9	D	250	260	Right-handed alpha
Helix 64	AH1	D	269	284	Right-handed alpha
Helix 65	AH2	D	311	319	Right-handed alpha
Helix 66	AH3	D	328	346	Right-handed alpha
Helix 67	AH4	D	348	368	Right-handed alpha
Helix 68	AH5	D	372	380	Right-handed alpha
Helix 69	AH6	D	386	390	Right-handed 310
Helix 70	AH7	D	392	410	Right-handed alpha

There are 9 sheets in PDB entry 6AJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	10	14	parallel
Strand 3	A	69	72	parallel
Strand 4	A	302	306	parallel
Strand 5	A	290	295	anti-parallel
Strand 6	A	106	111	anti-parallel
Strand 7	A	128	132	anti-parallel
Strand 8	A	264	268	parallel
Strand 9	A	206	210	parallel
Strand 10	A	245	249	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	176	184	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	152	158	anti-parallel
Strand 3	B	150	156	anti-parallel
Strand 4	B	165	172	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	10	13	parallel
Strand 3	B	69	72	parallel
Strand 4	B	302	305	parallel
Strand 5	B	290	295	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	128	132	anti-parallel
Strand 8	B	264	268	parallel
Strand 9	B	206	210	parallel
Strand 10	B	245	249	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	10	14	parallel
Strand 3	C	71	72	parallel
Strand 4	C	302	306	parallel
Strand 5	C	290	295	anti-parallel
Strand 6	C	106	111	anti-parallel
Strand 7	C	128	132	anti-parallel
Strand 8	C	264	268	parallel
Strand 9	C	206	210	parallel
Strand 10	C	245	249	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	146	first strand
Strand 2	C	176	184	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	141	146	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	172	first strand
Strand 2	C	150	156	anti-parallel
Strand 3	D	152	158	anti-parallel
Strand 4	D	165	170	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	10	13	parallel
Strand 3	D	69	72	parallel
Strand 4	D	302	305	parallel
Strand 5	D	294	295	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	129	132	anti-parallel
Strand 8	D	265	268	parallel
Strand 9	D	206	210	parallel
Strand 10	D	245	249	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	10	13	parallel
Strand 3	D	69	72	parallel
Strand 4	D	302	305	parallel
Strand 5	D	294	295	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	290	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJB