Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AJC entry

There are 8 chains in PDB entry 6AJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ILE 413
B	SER 1	ILE 413
C	SER 1	ILE 413
D	SER 1	ILE 413
E	SER 1	ILE 413
F	SER 1	ILE 413
G	SER 1	ILE 413
H	LYS 3	ILE 413

There are136 helices in PDB entry 6AJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	45	52	Right-handed alpha
Helix 3	AA3	A	54	68	Right-handed alpha
Helix 4	AA4	A	79	87	Right-handed alpha
Helix 5	AA5	A	94	104	Right-handed alpha
Helix 6	AA6	A	136	141	Right-handed 310
Helix 7	AA7	A	185	203	Right-handed alpha
Helix 8	AA8	A	217	234	Right-handed alpha
Helix 9	AA9	A	234	242	Right-handed alpha
Helix 10	AB1	A	250	260	Right-handed alpha
Helix 11	AB2	A	269	284	Right-handed alpha
Helix 12	AB3	A	311	320	Right-handed alpha
Helix 13	AB4	A	328	347	Right-handed alpha
Helix 14	AB5	A	348	368	Right-handed alpha
Helix 15	AB6	A	372	380	Right-handed alpha
Helix 16	AB7	A	386	390	Right-handed 310
Helix 17	AB8	A	392	412	Right-handed alpha
Helix 18	AB9	B	16	31	Right-handed alpha
Helix 19	AC1	B	45	52	Right-handed alpha
Helix 20	AC2	B	54	68	Right-handed alpha
Helix 21	AC3	B	79	87	Right-handed alpha
Helix 22	AC4	B	94	104	Right-handed alpha
Helix 23	AC5	B	136	141	Right-handed 310
Helix 24	AC6	B	185	202	Right-handed alpha
Helix 25	AC7	B	217	234	Right-handed alpha
Helix 26	AC8	B	234	241	Right-handed alpha
Helix 27	AC9	B	250	260	Right-handed alpha
Helix 28	AD1	B	269	285	Right-handed alpha
Helix 29	AD2	B	311	320	Right-handed alpha
Helix 30	AD3	B	328	347	Right-handed alpha
Helix 31	AD4	B	348	367	Right-handed alpha
Helix 32	AD5	B	372	380	Right-handed alpha
Helix 33	AD6	B	386	390	Right-handed 310
Helix 34	AD7	B	392	411	Right-handed alpha
Helix 35	AD8	C	16	31	Right-handed alpha
Helix 36	AD9	C	45	52	Right-handed alpha
Helix 37	AE1	C	54	68	Right-handed alpha
Helix 38	AE2	C	79	86	Right-handed alpha
Helix 39	AE3	C	94	104	Right-handed alpha
Helix 40	AE4	C	136	141	Right-handed 310
Helix 41	AE5	C	185	202	Right-handed alpha
Helix 42	AE6	C	217	234	Right-handed alpha
Helix 43	AE7	C	234	241	Right-handed alpha
Helix 44	AE8	C	250	260	Right-handed alpha
Helix 45	AE9	C	269	285	Right-handed alpha
Helix 46	AF1	C	311	321	Right-handed alpha
Helix 47	AF2	C	328	347	Right-handed alpha
Helix 48	AF3	C	348	369	Right-handed alpha
Helix 49	AF4	C	372	380	Right-handed alpha
Helix 50	AF5	C	386	390	Right-handed 310
Helix 51	AF6	C	392	413	Right-handed alpha
Helix 52	AF7	D	16	31	Right-handed alpha
Helix 53	AF8	D	45	52	Right-handed alpha
Helix 54	AF9	D	54	68	Right-handed alpha
Helix 55	AG1	D	79	87	Right-handed alpha
Helix 56	AG2	D	94	104	Right-handed alpha
Helix 57	AG3	D	136	141	Right-handed 310
Helix 58	AG4	D	185	203	Right-handed alpha
Helix 59	AG5	D	219	234	Right-handed alpha
Helix 60	AG6	D	234	241	Right-handed alpha
Helix 61	AG7	D	250	260	Right-handed alpha
Helix 62	AG8	D	269	285	Right-handed alpha
Helix 63	AG9	D	311	320	Right-handed alpha
Helix 64	AH1	D	328	347	Right-handed alpha
Helix 65	AH2	D	348	368	Right-handed alpha
Helix 66	AH3	D	372	380	Right-handed alpha
Helix 67	AH4	D	381	385	Right-handed 310
Helix 68	AH5	D	386	390	Right-handed 310
Helix 69	AH6	D	392	412	Right-handed alpha
Helix 70	AH7	E	16	30	Right-handed alpha
Helix 71	AH8	E	45	52	Right-handed alpha
Helix 72	AH9	E	54	68	Right-handed alpha
Helix 73	AI1	E	79	86	Right-handed alpha
Helix 74	AI2	E	94	104	Right-handed alpha
Helix 75	AI3	E	136	141	Right-handed 310
Helix 76	AI4	E	185	203	Right-handed alpha
Helix 77	AI5	E	217	234	Right-handed alpha
Helix 78	AI6	E	234	241	Right-handed alpha
Helix 79	AI7	E	250	260	Right-handed alpha
Helix 80	AI8	E	269	285	Right-handed alpha
Helix 81	AI9	E	311	320	Right-handed alpha
Helix 82	AJ1	E	328	347	Right-handed alpha
Helix 83	AJ2	E	348	368	Right-handed alpha
Helix 84	AJ3	E	372	380	Right-handed alpha
Helix 85	AJ4	E	386	390	Right-handed 310
Helix 86	AJ5	E	392	411	Right-handed alpha
Helix 87	AJ6	F	16	30	Right-handed alpha
Helix 88	AJ7	F	45	52	Right-handed alpha
Helix 89	AJ8	F	54	68	Right-handed alpha
Helix 90	AJ9	F	79	86	Right-handed alpha
Helix 91	AK1	F	94	104	Right-handed alpha
Helix 92	AK2	F	136	141	Right-handed 310
Helix 93	AK3	F	185	203	Right-handed alpha
Helix 94	AK4	F	217	234	Right-handed alpha
Helix 95	AK5	F	234	241	Right-handed alpha
Helix 96	AK6	F	250	260	Right-handed alpha
Helix 97	AK7	F	269	285	Right-handed alpha
Helix 98	AK8	F	311	321	Right-handed alpha
Helix 99	AK9	F	328	347	Right-handed alpha
Helix 100	AL1	F	348	368	Right-handed alpha
Helix 101	AL2	F	372	380	Right-handed alpha
Helix 102	AL3	F	386	390	Right-handed 310
Helix 103	AL4	F	392	410	Right-handed alpha
Helix 104	AL5	G	16	30	Right-handed alpha
Helix 105	AL6	G	45	52	Right-handed alpha
Helix 106	AL7	G	54	68	Right-handed alpha
Helix 107	AL8	G	79	87	Right-handed alpha
Helix 108	AL9	G	94	104	Right-handed alpha
Helix 109	AM1	G	136	141	Right-handed 310
Helix 110	AM2	G	185	203	Right-handed alpha
Helix 111	AM3	G	217	234	Right-handed alpha
Helix 112	AM4	G	234	242	Right-handed alpha
Helix 113	AM5	G	250	260	Right-handed alpha
Helix 114	AM6	G	269	285	Right-handed alpha
Helix 115	AM7	G	311	320	Right-handed alpha
Helix 116	AM8	G	328	347	Right-handed alpha
Helix 117	AM9	G	348	368	Right-handed alpha
Helix 118	AN1	G	372	380	Right-handed alpha
Helix 119	AN2	G	386	390	Right-handed 310
Helix 120	AN3	G	392	413	Right-handed alpha
Helix 121	AN4	H	16	31	Right-handed alpha
Helix 122	AN5	H	45	53	Right-handed alpha
Helix 123	AN6	H	54	68	Right-handed alpha
Helix 124	AN7	H	79	87	Right-handed alpha
Helix 125	AN8	H	94	104	Right-handed alpha
Helix 126	AN9	H	136	140	Right-handed 310
Helix 127	AO1	H	185	203	Right-handed alpha
Helix 128	AO2	H	217	234	Right-handed alpha
Helix 129	AO3	H	234	241	Right-handed alpha
Helix 130	AO4	H	250	260	Right-handed alpha
Helix 131	AO5	H	269	285	Right-handed alpha
Helix 132	AO6	H	311	320	Right-handed alpha
Helix 133	AO7	H	328	346	Right-handed alpha
Helix 134	AO8	H	348	368	Right-handed alpha
Helix 135	AO9	H	372	380	Right-handed alpha
Helix 136	AP1	H	392	413	Right-handed alpha

There are 23 sheets in PDB entry 6AJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	35	36	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	10	14	parallel
Strand 3	A	69	72	parallel
Strand 4	A	302	305	parallel
Strand 5	A	290	295	anti-parallel
Strand 6	A	106	111	anti-parallel
Strand 7	A	129	133	anti-parallel
Strand 8	A	265	268	parallel
Strand 9	A	206	210	parallel
Strand 10	A	245	249	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	176	184	anti-parallel
Strand 3	B	176	184	anti-parallel
Strand 4	B	142	146	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	172	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	B	150	158	anti-parallel
Strand 4	B	165	172	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	10	14	parallel
Strand 3	B	69	72	parallel
Strand 4	B	302	305	parallel
Strand 5	B	290	295	anti-parallel
Strand 6	B	106	111	anti-parallel
Strand 7	B	128	133	anti-parallel
Strand 8	B	264	268	parallel
Strand 9	B	206	210	parallel
Strand 10	B	245	249	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	35	36	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	43	first strand
Strand 2	C	10	14	parallel
Strand 3	C	69	72	parallel
Strand 4	C	302	305	parallel
Strand 5	C	290	295	anti-parallel
Strand 6	C	106	111	anti-parallel
Strand 7	C	129	133	anti-parallel
Strand 8	C	265	268	parallel
Strand 9	C	206	210	parallel
Strand 10	C	245	249	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	146	first strand
Strand 2	C	176	184	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	142	146	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	172	first strand
Strand 2	C	150	158	anti-parallel
Strand 3	D	150	158	anti-parallel
Strand 4	D	165	172	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	35	36	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	43	first strand
Strand 2	D	10	14	parallel
Strand 3	D	69	72	parallel
Strand 4	D	302	305	parallel
Strand 5	D	290	295	anti-parallel
Strand 6	D	106	111	anti-parallel
Strand 7	D	128	133	anti-parallel
Strand 8	D	264	268	parallel
Strand 9	D	206	210	parallel
Strand 10	D	245	249	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	35	36	parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	43	first strand
Strand 2	E	10	14	parallel
Strand 3	E	69	72	parallel
Strand 4	E	302	305	parallel
Strand 5	E	290	295	anti-parallel
Strand 6	E	106	111	anti-parallel
Strand 7	E	129	133	anti-parallel
Strand 8	E	265	268	parallel
Strand 9	E	206	210	parallel
Strand 10	E	245	249	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	176	184	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	142	146	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	165	172	first strand
Strand 2	E	150	158	anti-parallel
Strand 3	F	150	158	anti-parallel
Strand 4	F	165	172	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	5	first strand
Strand 2	F	35	36	parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	43	first strand
Strand 2	F	10	14	parallel
Strand 3	F	69	72	parallel
Strand 4	F	302	305	parallel
Strand 5	F	290	295	anti-parallel
Strand 6	F	106	111	anti-parallel
Strand 7	F	128	132	anti-parallel
Strand 8	F	264	268	parallel
Strand 9	F	206	210	parallel
Strand 10	F	245	249	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	35	36	parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	43	first strand
Strand 2	G	10	14	parallel
Strand 3	G	69	72	parallel
Strand 4	G	302	305	parallel
Strand 5	G	290	295	anti-parallel
Strand 6	G	106	111	anti-parallel
Strand 7	G	128	133	anti-parallel
Strand 8	G	264	268	parallel
Strand 9	G	206	210	parallel
Strand 10	G	245	249	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	146	first strand
Strand 2	G	176	184	anti-parallel
Strand 3	H	176	184	anti-parallel
Strand 4	H	142	146	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	172	first strand
Strand 2	G	150	158	anti-parallel
Strand 3	H	150	158	anti-parallel
Strand 4	H	165	172	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	35	36	parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	43	first strand
Strand 2	H	10	14	parallel
Strand 3	H	69	72	parallel
Strand 4	H	302	305	parallel
Strand 5	H	290	295	anti-parallel
Strand 6	H	106	111	anti-parallel
Strand 7	H	129	133	anti-parallel
Strand 8	H	265	268	parallel
Strand 9	H	206	210	parallel
Strand 10	H	245	249	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJC