Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AJE entry

There are 4 chains in PDB entry 6AJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	PRO 402
B	LEU 4	PRO 402
C	LEU 4	PRO 402
D	LEU 4	LYS 152

There are 60 helices in PDB entry 6AJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	32	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	71	78	Right-handed alpha
Helix 4	AA4	A	120	138	Right-handed alpha
Helix 5	AA5	A	158	171	Right-handed alpha
Helix 6	AA6	A	189	193	Right-handed 310
Helix 7	AA7	A	194	210	Right-handed alpha
Helix 8	AA8	A	267	282	Right-handed alpha
Helix 9	AA9	A	301	306	Right-handed 310
Helix 10	AB1	A	316	330	Right-handed alpha
Helix 11	AB2	A	344	354	Right-handed alpha
Helix 12	AB3	A	372	388	Right-handed alpha
Helix 13	AB4	A	391	396	Right-handed alpha
Helix 14	AB5	A	397	401	Right-handed 310
Helix 15	AB6	B	6	11	Right-handed alpha
Helix 16	AB7	B	18	32	Right-handed alpha
Helix 17	AB8	B	43	47	Right-handed 310
Helix 18	AB9	B	71	78	Right-handed alpha
Helix 19	AC1	B	105	107	Right-handed 310
Helix 20	AC2	B	120	133	Right-handed alpha
Helix 21	AC3	B	159	171	Right-handed alpha
Helix 22	AC4	B	172	174	Right-handed 310
Helix 23	AC5	B	194	210	Right-handed alpha
Helix 24	AC6	B	240	246	Right-handed 310
Helix 25	AC7	B	267	281	Right-handed alpha
Helix 26	AC8	B	301	306	Right-handed 310
Helix 27	AC9	B	315	329	Right-handed alpha
Helix 28	AD1	B	344	354	Right-handed alpha
Helix 29	AD2	B	363	368	Right-handed alpha
Helix 30	AD3	B	372	386	Right-handed alpha
Helix 31	AD4	B	391	396	Right-handed alpha
Helix 32	AD5	C	18	33	Right-handed alpha
Helix 33	AD6	C	43	47	Right-handed 310
Helix 34	AD7	C	71	78	Right-handed alpha
Helix 35	AD8	C	119	135	Right-handed alpha
Helix 36	AD9	C	158	171	Right-handed alpha
Helix 37	AE1	C	194	212	Right-handed alpha
Helix 38	AE2	C	241	245	Right-handed 310
Helix 39	AE3	C	267	282	Right-handed alpha
Helix 40	AE4	C	301	306	Right-handed 310
Helix 41	AE5	C	315	331	Right-handed alpha
Helix 42	AE6	C	343	353	Right-handed alpha
Helix 43	AE7	C	364	369	Right-handed alpha
Helix 44	AE8	C	371	388	Right-handed alpha
Helix 45	AE9	C	391	396	Right-handed 310
Helix 46	AF1	D	18	31	Right-handed alpha
Helix 47	AF2	D	43	47	Right-handed 310
Helix 48	AF3	D	71	77	Right-handed alpha
Helix 49	AF4	D	105	107	Right-handed 310
Helix 50	AF5	D	120	133	Right-handed alpha
Helix 51	AF6	D	158	171	Right-handed alpha
Helix 52	AF7	D	190	193	Right-handed 310
Helix 53	AF8	D	194	211	Right-handed alpha
Helix 54	AF9	D	267	282	Right-handed alpha
Helix 55	AG1	D	301	306	Right-handed 310
Helix 56	AG2	D	315	331	Right-handed alpha
Helix 57	AG3	D	344	355	Right-handed alpha
Helix 58	AG4	D	363	368	Right-handed alpha
Helix 59	AG5	D	371	387	Right-handed alpha
Helix 60	AG6	D	391	396	Right-handed alpha

There are 12 sheets in PDB entry 6AJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	53	55	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	82	88	parallel
Strand 3	A	145	150	parallel
Strand 4	A	176	180	parallel
Strand 5	A	257	262	parallel
Strand 6	A	285	288	parallel
Strand 7	A	335	338	parallel
Strand 8	A	358	361	parallel
Strand 9	A	59	61	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	109	112	anti-parallel
Strand 3	A	309	312	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	53	55	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	82	88	parallel
Strand 3	B	145	150	parallel
Strand 4	B	176	180	parallel
Strand 5	B	257	261	parallel
Strand 6	B	285	287	parallel
Strand 7	B	335	339	parallel
Strand 8	B	356	361	parallel
Strand 9	B	59	61	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	109	112	anti-parallel
Strand 3	B	309	312	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	53	55	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	82	88	parallel
Strand 3	C	145	150	parallel
Strand 4	C	176	180	parallel
Strand 5	C	257	261	parallel
Strand 6	C	285	288	parallel
Strand 7	C	335	338	parallel
Strand 8	C	358	361	parallel
Strand 9	C	59	61	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	109	112	anti-parallel
Strand 3	C	309	312	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	176	179	parallel
Strand 3	D	145	150	parallel
Strand 4	D	82	84	parallel
Strand 5	D	59	61	parallel
Strand 6	D	358	361	parallel
Strand 7	D	335	338	parallel
Strand 8	D	285	288	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	104	first strand
Strand 2	D	109	112	anti-parallel
Strand 3	D	309	312	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJE