Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AJF entry

There is 1 chain in PDB entry 6AJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -4HIS 928
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6AJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-3 12Right-handed alpha
Helix 2
AA2
A
12 32Right-handed alpha
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
83 101Right-handed alpha
Helix 5
AA5
A
112 114Right-handed 310
Helix 6
AA6
A
121 126Right-handed 310
Helix 7
AA7
A
143 160Right-handed alpha
Helix 8
AA8
A
161 164Right-handed 310
Helix 9
AA9
A
170 192Right-handed alpha
Helix 10
AB1
A
192 205Right-handed alpha
Helix 11
AB2
A
207 233Right-handed alpha
Helix 12
AB3
A
241 249Right-handed alpha
Helix 13
AB4
A
249 271Right-handed alpha
Helix 14
AB5
A
274 302Right-handed alpha
Helix 15
AB6
A
303 307Right-handed 310
Helix 16
AB7
A
309 331Right-handed alpha
Helix 17
AB8
A
332 342Right-handed alpha
Helix 18
AB9
A
343 347Right-handed 310
Helix 19
AC1
A
389 399Right-handed alpha
Helix 20
AC2
A
400 415Right-handed alpha
Helix 21
AC3
A
416 422Right-handed 310
Helix 22
AC4
A
428 432Right-handed 310
Helix 23
AC5
A
436 449Right-handed alpha
Helix 24
AC6
A
470 484Right-handed alpha
Helix 25
AC7
A
525 536Right-handed alpha
Helix 26
AC8
A
548 584Right-handed alpha
Helix 27
AC9
A
586 612Right-handed alpha
Helix 28
AD1
A
629 661Right-handed alpha
Helix 29
AD2
A
663 694Right-handed alpha
Helix 30
AD3
A
698 717Right-handed alpha
Helix 31
AD4
A
722 732Right-handed alpha
Helix 32
AD5
A
733 735Right-handed 310
Helix 33
AD6
A
751 760Right-handed alpha
Helix 34
AD7
A
787 800Right-handed alpha
Helix 35
AD8
A
808 828Right-handed alpha
Helix 36
AD9
A
833 840Right-handed alpha
Helix 37
AE1
A
841 862Right-handed alpha
Helix 38
AE2
A
863 872Right-handed alpha
Helix 39
AE3
A
874 883Right-handed alpha
Helix 40
AE4
A
885 891Right-handed alpha
Helix 41
AE5
A
891 905Right-handed alpha
Helix 42
AE6
A
907 912Right-handed alpha
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There are 4 sheets in PDB entry 6AJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
133 136anti-parallel
Strand 3
A
70 73anti-parallel
Strand 4
A
166 169anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
627 628parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
513 518anti-parallel
Strand 3
A
457 463anti-parallel
Strand 4
A
542 547anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 768first strand
Strand 2
A
774 777anti-parallel
Strand 3
A
780 783anti-parallel
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