Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AJK entry

There are 2 chains in PDB entry 6AJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 33GLU 325
B
 G 922 C 949
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6AJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 50Right-handed alpha
Helix 2
AA2
A
67 75Right-handed alpha
Helix 3
AA3
A
87 89Right-handed 310
Helix 4
AA4
A
90 101Right-handed alpha
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
A
122 126Right-handed 310
Helix 7
AA7
A
143 161Right-handed alpha
Helix 8
AA8
A
162 166Right-handed 310
Helix 9
AA9
A
178 186Right-handed alpha
Helix 10
AB1
A
194 202Right-handed alpha
Helix 11
AB2
A
213 217Right-handed 310
Helix 12
AB3
A
241 253Right-handed alpha
Helix 13
AB4
A
260 265Right-handed alpha
Helix 14
AB5
A
266 268Right-handed 310
Helix 15
AB6
A
269 285Right-handed alpha
Helix 16
AB7
A
291 295Right-handed 310
Helix 17
AB8
A
296 314Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6AJK.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
80 85parallel
Strand 3
A
58 61parallel
Strand 4
A
136 140parallel
Strand 5
A
171 177parallel
Strand 6
A
225 232anti-parallel
Strand 7
A
204 212anti-parallel
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