Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AJM entry

There are 6 chains in PDB entry 6AJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 172
B
 MET 1THR 172
C
 LYS 6GLN 86
D
 LYS 6GLN 86
E
 LYS 6PRO 71
F
 LYS 6PRO 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6AJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 33Right-handed alpha
Helix 2
AA2
A
33 41Right-handed alpha
Helix 3
AA3
A
100 103Right-handed 310
Helix 4
AA4
A
106 124Right-handed alpha
Helix 5
AA5
A
137 146Right-handed alpha
Helix 6
AA6
A
164 171Right-handed alpha
Helix 7
AA7
B
24 34Right-handed alpha
Helix 8
AA8
B
34 41Right-handed alpha
Helix 9
AA9
B
100 103Right-handed 310
Helix 10
AB1
B
106 124Right-handed alpha
Helix 11
AB2
B
137 146Right-handed alpha
Helix 12
AB3
B
153 157Right-handed 310
Helix 13
AB4
B
164 171Right-handed alpha
Helix 14
AB5
C
14 28Right-handed alpha
Helix 15
AB6
C
31 52Right-handed alpha
Helix 16
AB7
C
57 70Right-handed alpha
Helix 17
AB8
C
75 86Right-handed alpha
Helix 18
AB9
D
14 28Right-handed alpha
Helix 19
AC1
D
31 52Right-handed alpha
Helix 20
AC2
D
57 70Right-handed alpha
Helix 21
AC3
D
75 86Right-handed alpha
Helix 22
AC4
E
15 28Right-handed alpha
Helix 23
AC5
E
31 68Right-handed alpha
Helix 24
AC6
F
14 28Right-handed alpha
Helix 25
AC7
F
31 68Right-handed alpha
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There are 6 sheets in PDB entry 6AJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
58 71anti-parallel
Strand 4
A
88 98anti-parallel
Strand 5
A
130 134parallel
Strand 6
A
159 163anti-parallel
Strand 7
A
150 151anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
45 51anti-parallel
Strand 3
A
58 71anti-parallel
Strand 4
C
53 56parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
58 70anti-parallel
Strand 4
B
88 98anti-parallel
Strand 5
B
130 134parallel
Strand 6
B
159 163anti-parallel
Strand 7
B
150 151anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
58 70anti-parallel
Strand 4
D
53 55parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 11first strand
Strand 2
E
9 13anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 13first strand
Strand 2
F
7 13anti-parallel
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