Analysis of interatomic Contacts of Structural Units in PDB entry:
6AK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AK1 entry

There are 2 chains in PDB entry 6AK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ALA 472
B
 LYS 3ALA 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 6AK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
35 49Right-handed alpha
Helix 4
AA4
A
65 69Right-handed 310
Helix 5
AA5
A
70 76Right-handed alpha
Helix 6
AA6
A
88 95Right-handed alpha
Helix 7
AA7
A
111 127Right-handed alpha
Helix 8
AA8
A
139 147Right-handed alpha
Helix 9
AA9
A
153 155Right-handed 310
Helix 10
AB1
A
156 174Right-handed alpha
Helix 11
AB2
A
231 241Right-handed alpha
Helix 12
AB3
A
250 268Right-handed alpha
Helix 13
AB4
A
288 301Right-handed alpha
Helix 14
AB5
A
304 317Right-handed alpha
Helix 15
AB6
A
319 323Right-handed 310
Helix 16
AB7
A
328 332Right-handed 310
Helix 17
AB8
A
334 345Right-handed alpha
Helix 18
AB9
A
354 363Right-handed alpha
Helix 19
AC1
A
374 388Right-handed alpha
Helix 20
AC2
A
402 412Right-handed alpha
Helix 21
AC3
A
412 419Right-handed alpha
Helix 22
AC4
A
430 436Right-handed alpha
Helix 23
AC5
A
447 453Right-handed 310
Helix 24
AC6
A
462 466Right-handed 310
Helix 25
AC7
B
21 25Right-handed 310
Helix 26
AC8
B
29 33Right-handed 310
Helix 27
AC9
B
35 49Right-handed alpha
Helix 28
AD1
B
65 69Right-handed 310
Helix 29
AD2
B
70 77Right-handed alpha
Helix 30
AD3
B
88 95Right-handed alpha
Helix 31
AD4
B
111 126Right-handed alpha
Helix 32
AD5
B
139 147Right-handed alpha
Helix 33
AD6
B
153 155Right-handed 310
Helix 34
AD7
B
156 174Right-handed alpha
Helix 35
AD8
B
193 196Right-handed 310
Helix 36
AD9
B
231 241Right-handed alpha
Helix 37
AE1
B
250 268Right-handed alpha
Helix 38
AE2
B
288 301Right-handed alpha
Helix 39
AE3
B
304 317Right-handed alpha
Helix 40
AE4
B
319 323Right-handed 310
Helix 41
AE5
B
328 332Right-handed 310
Helix 42
AE6
B
334 346Right-handed alpha
Helix 43
AE7
B
354 362Right-handed alpha
Helix 44
AE8
B
374 388Right-handed alpha
Helix 45
AE9
B
402 412Right-handed alpha
Helix 46
AF1
B
412 419Right-handed alpha
Helix 47
AF2
B
430 436Right-handed alpha
Helix 48
AF3
B
447 453Right-handed 310
Helix 49
AF4
B
461 466Right-handed 310
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There are 6 sheets in PDB entry 6AK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
276 284parallel
Strand 3
A
393 397parallel
Strand 4
A
6 12parallel
Strand 5
A
53 57parallel
Strand 6
A
100 106parallel
Strand 7
A
130 135parallel
Strand 8
A
223 227parallel
Strand 9
A
243 246parallel
Strand 10
A
276 284parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
189 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
207 208anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 373first strand
Strand 2
B
276 285parallel
Strand 3
B
393 397parallel
Strand 4
B
6 12parallel
Strand 5
B
53 57parallel
Strand 6
B
100 106parallel
Strand 7
B
130 135parallel
Strand 8
B
223 227parallel
Strand 9
B
243 246parallel
Strand 10
B
276 285parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 184first strand
Strand 2
B
189 191anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
207 208anti-parallel
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