Analysis of interatomic Contacts of Structural Units in PDB entry:
6AK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AK3 entry

There are 2 chains in PDB entry 6AK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 47GLY 1106
A
 CYS 47GLY 1106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6AK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
52 77Right-handed alpha
Helix 2
AA2
B
87 105Right-handed alpha
Helix 3
AA3
B
106 117Right-handed alpha
Helix 4
AA4
B
120 124Right-handed alpha
Helix 5
AA5
B
127 161Right-handed alpha
Helix 6
AA6
B
161 169Right-handed alpha
Helix 7
AA7
B
170 190Right-handed alpha
Helix 8
AA8
B
190 195Right-handed alpha
Helix 9
AA9
B
227 264Right-handed alpha
Helix 10
AB1
B
272 307Right-handed alpha
Helix 11
AB2
B
324 347Right-handed alpha
Helix 12
AB3
B
347 353Right-handed alpha
Helix 13
AB4
A
52 76Right-handed alpha
Helix 14
AB5
A
87 105Right-handed alpha
Helix 15
AB6
A
106 117Right-handed alpha
Helix 16
AB7
A
120 124Right-handed alpha
Helix 17
AB8
A
128 161Right-handed alpha
Helix 18
AB9
A
161 169Right-handed alpha
Helix 19
AC1
A
170 190Right-handed alpha
Helix 20
AC2
A
190 195Right-handed alpha
Helix 21
AC3
A
227 264Right-handed alpha
Helix 22
AC4
A
272 307Right-handed alpha
Helix 23
AC5
A
324 347Right-handed alpha
Helix 24
AC6
A
347 353Right-handed alpha
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There are 2 sheets in PDB entry 6AK3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
207 210anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
207 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il