Analysis of interatomic Contacts of Structural Units in PDB entry:
6AKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AKD entry

There is 1 chain in PDB entry 6AKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5GLY 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6AKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
35 52Right-handed alpha
Helix 3
AA3
A
64 77Right-handed alpha
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
111 119Right-handed alpha
Helix 6
AA6
A
135 139Right-handed 310
Helix 7
AA7
A
149 153Right-handed 310
Helix 8
AA8
A
185 197Right-handed alpha
Helix 9
AA9
A
216 228Right-handed alpha
Helix 10
AB1
A
236 241Right-handed 310
Helix 11
AB2
A
242 251Right-handed alpha
Helix 12
AB3
A
259 268Right-handed alpha
Helix 13
AB4
A
290 301Right-handed alpha
Helix 14
AB5
A
312 316Right-handed 310
Helix 15
AB6
A
328 333Right-handed alpha
Helix 16
AB7
A
378 383Right-handed 310
Helix 17
AB8
A
416 418Right-handed 310
Helix 18
AB9
A
427 438Right-handed alpha
Helix 19
AC1
A
466 478Right-handed alpha
Helix 20
AC2
A
502 515Right-handed alpha
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There are 8 sheets in PDB entry 6AKD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
31 34anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
56 60parallel
Strand 3
A
104 107parallel
Strand 4
A
129 130parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
375 376anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
231 234parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
281 285parallel
Strand 3
A
305 310parallel
Strand 4
A
320 323anti-parallel
Strand 5
A
342 343anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 352first strand
Strand 2
A
362 368anti-parallel
Strand 3
A
392 403anti-parallel
Strand 4
A
386 389anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 352first strand
Strand 2
A
362 368anti-parallel
Strand 3
A
392 403anti-parallel
Strand 4
A
409 414anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 447first strand
Strand 2
A
456 461anti-parallel
Strand 3
A
486 489parallel
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