Analysis of interatomic Contacts of Structural Units in PDB entry:
6AKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AKE entry

There are 4 chains in PDB entry 6AKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0SER 183
B
 ALA 203PHE 319
C
 GLY -1ALA 181
D
 ALA 205PHE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6AKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 26Right-handed alpha
Helix 2
AA2
A
74 107Right-handed alpha
Helix 3
AA3
A
109 147Right-handed alpha
Helix 4
AA4
A
152 155Right-handed 310
Helix 5
AA5
A
160 182Right-handed alpha
Helix 6
AA6
B
210 218Right-handed alpha
Helix 7
AA7
B
266 270Right-handed 310
Helix 8
AA8
C
0 26Right-handed alpha
Helix 9
AA9
C
72 104Right-handed alpha
Helix 10
AB1
C
116 148Right-handed alpha
Helix 11
AB2
C
152 155Right-handed 310
Helix 12
AB3
C
160 181Right-handed alpha
Helix 13
AB4
D
211 216Right-handed alpha
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There are 6 sheets in PDB entry 6AKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
43 47anti-parallel
Strand 4
A
30 34anti-parallel
Strand 5
A
157 159anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 209first strand
Strand 2
B
237 244parallel
Strand 3
B
294 302anti-parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
272 277anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
313 318anti-parallel
Strand 3
B
249 255anti-parallel
Strand 4
B
285 291anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 56first strand
Strand 2
C
43 47anti-parallel
Strand 3
C
30 34anti-parallel
Strand 4
C
157 159anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
206 210first strand
Strand 2
D
238 243parallel
Strand 3
D
297 302anti-parallel
Strand 4
D
259 267anti-parallel
Strand 5
D
270 277anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 227first strand
Strand 2
D
313 317anti-parallel
Strand 3
D
253 255anti-parallel
Strand 4
D
285 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il