Analysis of interatomic Contacts of Structural Units in PDB entry:
6AKG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AKG entry

There are 4 chains in PDB entry 6AKG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0SER 183
B
 ALA 203PHE 319
C
 SER 0SER 183
D
 ALA 203PHE 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6AKG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 26Right-handed alpha
Helix 2
AA2
A
76 105Right-handed alpha
Helix 3
AA3
A
112 148Right-handed alpha
Helix 4
AA4
A
160 182Right-handed alpha
Helix 5
AA5
B
210 216Right-handed alpha
Helix 6
AA6
B
267 270Right-handed 310
Helix 7
AA7
C
1 26Right-handed alpha
Helix 8
AA8
C
74 100Right-handed alpha
Helix 9
AA9
C
109 114Right-handed alpha
Helix 10
AB1
C
115 141Right-handed alpha
Helix 11
AB2
C
143 148Right-handed alpha
Helix 12
AB3
C
160 182Right-handed alpha
Helix 13
AB4
D
210 216Right-handed alpha
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There are 7 sheets in PDB entry 6AKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
43 47anti-parallel
Strand 4
A
30 34anti-parallel
Strand 5
A
157 159anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
238 244parallel
Strand 3
B
294 302anti-parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
272 277anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
313 315anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
285 289anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
309 310anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 55first strand
Strand 2
C
44 47anti-parallel
Strand 3
C
30 33anti-parallel
Strand 4
C
157 159anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
206 209first strand
Strand 2
D
237 242parallel
Strand 3
D
295 302anti-parallel
Strand 4
D
259 266anti-parallel
Strand 5
D
275 277anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 227first strand
Strand 2
D
313 317anti-parallel
Strand 3
D
250 255anti-parallel
Strand 4
D
285 290anti-parallel
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