Analysis of interatomic Contacts of Structural Units in PDB entry:
6AKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AKR entry

There are 4 chains in PDB entry 6AKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 326GLN 650
B
 PHE 320ILE 648
C
 GLU 325PRO 649
D
 GLU 327GLN 650
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 88 helices in PDB entry 6AKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
326 335Right-handed alpha
Helix 2
AA2
A
336 339Right-handed 310
Helix 3
AA3
A
343 351Right-handed alpha
Helix 4
AA4
A
354 367Right-handed alpha
Helix 5
AA5
A
368 373Right-handed alpha
Helix 6
AA6
A
376 390Right-handed alpha
Helix 7
AA7
A
399 415Right-handed alpha
Helix 8
AA8
A
416 420Right-handed 310
Helix 9
AA9
A
424 438Right-handed alpha
Helix 10
AB1
A
446 453Right-handed alpha
Helix 11
AB2
A
455 461Right-handed alpha
Helix 12
AB3
A
465 478Right-handed alpha
Helix 13
AB4
A
479 481Right-handed 310
Helix 14
AB5
A
491 508Right-handed alpha
Helix 15
AB6
A
509 512Right-handed 310
Helix 16
AB7
A
513 527Right-handed alpha
Helix 17
AB8
A
540 557Right-handed alpha
Helix 18
AB9
A
558 562Right-handed 310
Helix 19
AC1
A
563 588Right-handed alpha
Helix 20
AC2
A
602 614Right-handed alpha
Helix 21
AC3
A
614 626Right-handed alpha
Helix 22
AC4
A
630 646Right-handed alpha
Helix 23
AC5
B
324 334Right-handed alpha
Helix 24
AC6
B
335 337Right-handed 310
Helix 25
AC7
B
343 351Right-handed alpha
Helix 26
AC8
B
354 367Right-handed alpha
Helix 27
AC9
B
368 373Right-handed alpha
Helix 28
AD1
B
376 390Right-handed alpha
Helix 29
AD2
B
399 415Right-handed alpha
Helix 30
AD3
B
416 420Right-handed 310
Helix 31
AD4
B
424 438Right-handed alpha
Helix 32
AD5
B
446 453Right-handed alpha
Helix 33
AD6
B
455 461Right-handed alpha
Helix 34
AD7
B
465 478Right-handed alpha
Helix 35
AD8
B
479 481Right-handed 310
Helix 36
AD9
B
491 508Right-handed alpha
Helix 37
AE1
B
509 512Right-handed 310
Helix 38
AE2
B
513 527Right-handed alpha
Helix 39
AE3
B
540 557Right-handed alpha
Helix 40
AE4
B
558 562Right-handed 310
Helix 41
AE5
B
563 588Right-handed alpha
Helix 42
AE6
B
602 614Right-handed alpha
Helix 43
AE7
B
614 626Right-handed alpha
Helix 44
AE8
B
630 647Right-handed alpha
Helix 45
AE9
C
326 335Right-handed alpha
Helix 46
AF1
C
336 339Right-handed 310
Helix 47
AF2
C
343 351Right-handed alpha
Helix 48
AF3
C
354 367Right-handed alpha
Helix 49
AF4
C
368 373Right-handed alpha
Helix 50
AF5
C
376 390Right-handed alpha
Helix 51
AF6
C
399 414Right-handed alpha
Helix 52
AF7
C
415 420Right-handed 310
Helix 53
AF8
C
424 438Right-handed alpha
Helix 54
AF9
C
446 453Right-handed alpha
Helix 55
AG1
C
455 462Right-handed alpha
Helix 56
AG2
C
465 478Right-handed alpha
Helix 57
AG3
C
479 481Right-handed 310
Helix 58
AG4
C
491 508Right-handed alpha
Helix 59
AG5
C
509 512Right-handed 310
Helix 60
AG6
C
513 527Right-handed alpha
Helix 61
AG7
C
540 557Right-handed alpha
Helix 62
AG8
C
558 562Right-handed 310
Helix 63
AG9
C
563 588Right-handed alpha
Helix 64
AH1
C
602 614Right-handed alpha
Helix 65
AH2
C
614 626Right-handed alpha
Helix 66
AH3
C
630 646Right-handed alpha
Helix 67
AH4
D
328 334Right-handed alpha
Helix 68
AH5
D
335 339Right-handed 310
Helix 69
AH6
D
343 351Right-handed alpha
Helix 70
AH7
D
354 367Right-handed alpha
Helix 71
AH8
D
368 373Right-handed alpha
Helix 72
AH9
D
376 390Right-handed alpha
Helix 73
AI1
D
399 415Right-handed alpha
Helix 74
AI2
D
416 420Right-handed 310
Helix 75
AI3
D
424 438Right-handed alpha
Helix 76
AI4
D
446 453Right-handed alpha
Helix 77
AI5
D
455 461Right-handed alpha
Helix 78
AI6
D
465 478Right-handed alpha
Helix 79
AI7
D
479 481Right-handed 310
Helix 80
AI8
D
491 508Right-handed alpha
Helix 81
AI9
D
509 512Right-handed 310
Helix 82
AJ1
D
513 527Right-handed alpha
Helix 83
AJ2
D
540 557Right-handed alpha
Helix 84
AJ3
D
558 562Right-handed 310
Helix 85
AJ4
D
563 588Right-handed alpha
Helix 86
AJ5
D
602 614Right-handed alpha
Helix 87
AJ6
D
614 626Right-handed alpha
Helix 88
AJ7
D
630 646Right-handed alpha
Back to top of page
There are no sheets in PDB entry 6AKR
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il