Analysis of interatomic Contacts of Structural Units in PDB entry:
6AKZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AKZ entry

There is 1 chain in PDB entry 6AKZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10GLU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6AKZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 27Right-handed alpha
Helix 2
AA2
A
28 30Right-handed 310
Helix 3
AA3
A
31 57Right-handed alpha
Helix 4
AA4
A
58 61Right-handed 310
Helix 5
AA5
A
67 69Right-handed 310
Helix 6
AA6
A
75 86Right-handed alpha
Helix 7
AA7
A
95 113Right-handed alpha
Helix 8
AA8
A
133 141Right-handed alpha
Helix 9
AA9
A
142 154Right-handed alpha
Helix 10
AB1
A
198 203Right-handed alpha
Helix 11
AB2
A
203 209Right-handed alpha
Helix 12
AB3
A
210 215Right-handed alpha
Helix 13
AB4
A
217 221Right-handed 310
Helix 14
AB5
A
228 232Right-handed 310
Helix 15
AB6
A
277 288Right-handed alpha
Helix 16
AB7
A
289 291Right-handed 310
Helix 17
AB8
A
299 303Right-handed 310
Helix 18
AB9
A
328 335Right-handed 310
Helix 19
AC1
A
381 395Right-handed alpha
Helix 20
AC2
A
398 403Right-handed alpha
Helix 21
AC3
A
406 413Right-handed alpha
Helix 22
AC4
A
418 423Right-handed 310
Helix 23
AC5
A
425 432Right-handed alpha
Helix 24
AC6
A
444 461Right-handed alpha
Helix 25
AC7
A
465 475Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6AKZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
87 91parallel
Strand 3
A
346 350anti-parallel
Strand 4
A
256 261anti-parallel
Strand 5
A
367 371anti-parallel
Strand 6
A
178 181anti-parallel
Strand 7
A
127 128anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
376 378anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
322 323anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
272 274anti-parallel
Strand 3
A
355 357anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il