Analysis of interatomic Contacts of Structural Units in PDB entry:
6ALM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ALM entry

There is 1 chain in PDB entry 6ALM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 21ARG 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6ALM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 48Right-handed alpha
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
65 67Right-handed 310
Helix 4
AA4
A
68 79Right-handed alpha
Helix 5
AA5
A
95 100Right-handed alpha
Helix 6
AA6
A
111 113Right-handed 310
Helix 7
AA7
A
114 127Right-handed alpha
Helix 8
AA8
A
137 141Right-handed 310
Helix 9
AA9
A
205 213Right-handed alpha
Helix 10
AB1
A
222 230Right-handed 310
Helix 11
AB2
A
238 249Right-handed alpha
Helix 12
AB3
A
278 296Right-handed alpha
Helix 13
AB4
A
340 348Right-handed 310
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There are 5 sheets in PDB entry 6ALM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
86 90parallel
Strand 3
A
306 310anti-parallel
Strand 4
A
180 187anti-parallel
Strand 5
A
331 338anti-parallel
Strand 6
A
144 146anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
86 90parallel
Strand 3
A
306 310anti-parallel
Strand 4
A
180 187anti-parallel
Strand 5
A
331 338anti-parallel
Strand 6
A
130 134anti-parallel
Strand 7
A
354 355parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 168first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
193 198anti-parallel
Strand 4
A
297 300anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
272 274anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
264 265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il