Analysis of interatomic Contacts of Structural Units in PDB entry:
6AM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AM0 entry

There are 8 chains in PDB entry 6AM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASN 263
B	MET 1	ASP 185
C	LYS 357	PHE 379
D	MET 1	ASN 65
E	SER 2	ASN 263
F	MET 1	THR 188
G	HIS 355	VAL 380
H	LEU 2	PRO 64

There are 32 helices in PDB entry 6AM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	13	26	Right-handed alpha
Helix 3	AA3	A	30	35	Right-handed 310
Helix 4	AA4	A	36	54	Right-handed alpha
Helix 5	AA5	A	66	78	Right-handed alpha
Helix 6	AA6	A	79	82	Right-handed 310
Helix 7	AA7	A	87	100	Right-handed alpha
Helix 8	AA8	A	140	154	Right-handed alpha
Helix 9	AA9	A	206	214	Right-handed alpha
Helix 10	AB1	A	228	260	Right-handed alpha
Helix 11	AB2	B	2	20	Right-handed alpha
Helix 12	AB3	B	118	127	Right-handed alpha
Helix 13	AB4	B	164	181	Right-handed alpha
Helix 14	AB5	C	370	374	Right-handed 310
Helix 15	AB6	D	52	54	Right-handed 310
Helix 16	AB7	E	7	11	Right-handed 310
Helix 17	AB8	E	13	26	Right-handed alpha
Helix 18	AB9	E	30	35	Right-handed 310
Helix 19	AC1	E	36	54	Right-handed alpha
Helix 20	AC2	E	54	59	Right-handed alpha
Helix 21	AC3	E	66	78	Right-handed alpha
Helix 22	AC4	E	79	82	Right-handed 310
Helix 23	AC5	E	87	100	Right-handed alpha
Helix 24	AC6	E	140	154	Right-handed alpha
Helix 25	AC7	E	212	216	Right-handed 310
Helix 26	AC8	E	225	227	Right-handed 310
Helix 27	AC9	E	228	259	Right-handed alpha
Helix 28	AD1	F	2	22	Right-handed alpha
Helix 29	AD2	F	118	123	Right-handed alpha
Helix 30	AD3	F	164	181	Right-handed alpha
Helix 31	AD4	G	370	374	Right-handed 310
Helix 32	AD5	H	52	54	Right-handed 310

There are 8 sheets in PDB entry 6AM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	A	175	184	parallel
Strand 4	A	166	170	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	104	111	anti-parallel
Strand 3	A	116	122	anti-parallel
Strand 4	A	198	205	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	99	105	anti-parallel
Strand 3	B	44	59	anti-parallel
Strand 4	B	25	41	anti-parallel
Strand 5	B	157	162	anti-parallel
Strand 6	B	147	151	anti-parallel
Strand 7	B	140	144	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	50	first strand
Strand 2	D	30	38	anti-parallel
Strand 3	D	18	26	anti-parallel
Strand 4	D	8	12	anti-parallel
Strand 5	D	56	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	176	181	parallel
Strand 4	E	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	116	122	anti-parallel
Strand 4	E	198	205	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	116	first strand
Strand 2	F	99	103	anti-parallel
Strand 3	F	44	59	anti-parallel
Strand 4	F	25	41	anti-parallel
Strand 5	F	157	162	anti-parallel
Strand 6	F	147	151	anti-parallel
Strand 7	F	140	144	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	50	first strand
Strand 2	H	30	38	anti-parallel
Strand 3	H	19	26	anti-parallel
Strand 4	H	8	11	anti-parallel
Strand 5	H	57	59	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AM0