Analysis of interatomic Contacts of Structural Units in PDB entry:
6AMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AMC entry

There are 8 chains in PDB entry 6AMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 81
A	THR 83	ASN 387
B	MET 1	HIS 81
B	THR 83	LEU 389
C	MET 1	HIS 81
C	THR 83	ASN 387
D	MET 1	HIS 81
D	THR 83	VAL 173

There are 81 helices in PDB entry 6AMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	14	Right-handed 310
Helix 2	AA2	A	15	30	Right-handed alpha
Helix 3	AA3	A	32	46	Right-handed alpha
Helix 4	AA4	A	56	64	Right-handed alpha
Helix 5	AA5	A	74	76	Right-handed 310
Helix 6	AA6	A	81	96	Right-handed alpha
Helix 7	AA7	A	108	122	Right-handed alpha
Helix 8	AA8	A	131	137	Right-handed alpha
Helix 9	AA9	A	137	147	Right-handed alpha
Helix 10	AB1	A	160	176	Right-handed alpha
Helix 11	AB2	A	191	201	Right-handed alpha
Helix 12	AB3	A	201	216	Right-handed alpha
Helix 13	AB4	A	229	237	Right-handed alpha
Helix 14	AB5	A	238	240	Right-handed 310
Helix 15	AB6	A	264	269	Right-handed alpha
Helix 16	AB7	A	296	300	Right-handed 310
Helix 17	AB8	A	305	314	Right-handed alpha
Helix 18	AB9	A	324	339	Right-handed alpha
Helix 19	AC1	A	343	360	Right-handed alpha
Helix 20	AC2	A	374	376	Right-handed 310
Helix 21	AC3	A	377	386	Right-handed alpha
Helix 22	AC4	B	12	31	Right-handed alpha
Helix 23	AC5	B	32	46	Right-handed alpha
Helix 24	AC6	B	56	64	Right-handed alpha
Helix 25	AC7	B	73	76	Right-handed 310
Helix 26	AC8	B	81	96	Right-handed alpha
Helix 27	AC9	B	108	122	Right-handed alpha
Helix 28	AD1	B	131	137	Right-handed alpha
Helix 29	AD2	B	137	147	Right-handed alpha
Helix 30	AD3	B	160	176	Right-handed alpha
Helix 31	AD4	B	191	201	Right-handed alpha
Helix 32	AD5	B	201	216	Right-handed alpha
Helix 33	AD6	B	229	237	Right-handed alpha
Helix 34	AD7	B	238	240	Right-handed 310
Helix 35	AD8	B	264	269	Right-handed alpha
Helix 36	AD9	B	296	300	Right-handed 310
Helix 37	AE1	B	305	314	Right-handed alpha
Helix 38	AE2	B	324	339	Right-handed alpha
Helix 39	AE3	B	343	360	Right-handed alpha
Helix 40	AE4	B	374	376	Right-handed 310
Helix 41	AE5	B	377	386	Right-handed alpha
Helix 42	AE6	C	12	14	Right-handed 310
Helix 43	AE7	C	15	30	Right-handed alpha
Helix 44	AE8	C	32	46	Right-handed alpha
Helix 45	AE9	C	56	64	Right-handed alpha
Helix 46	AF1	C	73	76	Right-handed 310
Helix 47	AF2	C	81	96	Right-handed alpha
Helix 48	AF3	C	108	121	Right-handed alpha
Helix 49	AF4	C	131	137	Right-handed alpha
Helix 50	AF5	C	137	147	Right-handed alpha
Helix 51	AF6	C	160	176	Right-handed alpha
Helix 52	AF7	C	191	216	Right-handed alpha
Helix 53	AF8	C	229	237	Right-handed alpha
Helix 54	AF9	C	238	240	Right-handed 310
Helix 55	AG1	C	256	260	Right-handed 310
Helix 56	AG2	C	264	269	Right-handed alpha
Helix 57	AG3	C	296	300	Right-handed 310
Helix 58	AG4	C	305	314	Right-handed alpha
Helix 59	AG5	C	324	339	Right-handed alpha
Helix 60	AG6	C	343	360	Right-handed alpha
Helix 61	AG7	C	374	376	Right-handed 310
Helix 62	AG8	C	377	386	Right-handed alpha
Helix 63	AG9	D	12	30	Right-handed alpha
Helix 64	AH1	D	32	46	Right-handed alpha
Helix 65	AH2	D	56	64	Right-handed alpha
Helix 66	AH3	D	74	76	Right-handed 310
Helix 67	AH4	D	81	96	Right-handed alpha
Helix 68	AH5	D	108	121	Right-handed alpha
Helix 69	AH6	D	131	137	Right-handed alpha
Helix 70	AH7	D	137	147	Right-handed alpha
Helix 71	AH8	D	160	176	Right-handed alpha
Helix 72	AH9	D	191	216	Right-handed alpha
Helix 73	AI1	D	229	237	Right-handed alpha
Helix 74	AI2	D	238	240	Right-handed 310
Helix 75	AI3	D	264	269	Right-handed alpha
Helix 76	AI4	D	296	300	Right-handed 310
Helix 77	AI5	D	305	314	Right-handed alpha
Helix 78	AI6	D	324	339	Right-handed alpha
Helix 79	AI7	D	343	360	Right-handed alpha
Helix 80	AI8	D	374	376	Right-handed 310
Helix 81	AI9	D	377	385	Right-handed alpha

There are 16 sheets in PDB entry 6AMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	6	7	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	365	370	parallel
Strand 4	A	221	225	parallel
Strand 5	A	246	254	parallel
Strand 6	A	318	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	124	130	parallel
Strand 3	A	100	105	parallel
Strand 4	A	179	181	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	274	first strand
Strand 2	A	277	281	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	6	7	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	67	71	anti-parallel
Strand 3	B	365	369	parallel
Strand 4	B	221	225	parallel
Strand 5	B	246	254	parallel
Strand 6	B	317	323	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	124	130	parallel
Strand 3	B	100	105	parallel
Strand 4	B	179	181	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	274	first strand
Strand 2	B	277	281	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	6	7	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	67	71	anti-parallel
Strand 3	C	365	369	parallel
Strand 4	C	221	225	parallel
Strand 5	C	246	254	parallel
Strand 6	C	317	323	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	154	first strand
Strand 2	C	124	130	parallel
Strand 3	C	100	105	parallel
Strand 4	C	179	181	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	274	first strand
Strand 2	C	277	281	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	6	7	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	67	72	anti-parallel
Strand 3	D	365	370	parallel
Strand 4	D	221	225	parallel
Strand 5	D	246	254	parallel
Strand 6	D	317	323	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	154	first strand
Strand 2	D	124	130	parallel
Strand 3	D	100	104	parallel
Strand 4	D	179	181	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	274	first strand
Strand 2	D	277	281	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AMC