Analysis of interatomic Contacts of Structural Units in PDB entry:
6AMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AMG entry

There are 2 chains in PDB entry 6AMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 37PRO 194
B
 LYS 35PRO 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6AMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 57Right-handed 310
Helix 2
AA2
A
66 70Right-handed 310
Helix 3
AA3
A
85 96Right-handed alpha
Helix 4
AA4
A
143 145Right-handed 310
Helix 5
AA5
A
164 167Right-handed 310
Helix 6
AA6
A
168 176Right-handed alpha
Helix 7
AA7
A
182 185Right-handed 310
Helix 8
AA8
A
186 193Right-handed alpha
Helix 9
AA9
B
53 57Right-handed 310
Helix 10
AB1
B
66 70Right-handed 310
Helix 11
AB2
B
85 96Right-handed alpha
Helix 12
AB3
B
143 145Right-handed 310
Helix 13
AB4
B
168 176Right-handed alpha
Helix 14
AB5
B
182 185Right-handed 310
Helix 15
AB6
B
186 193Right-handed alpha
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There are 2 sheets in PDB entry 6AMG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 64first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
103 116anti-parallel
Strand 4
A
119 135anti-parallel
Strand 5
A
147 151anti-parallel
Strand 6
A
161 162anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 64first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
102 116anti-parallel
Strand 4
B
119 135anti-parallel
Strand 5
B
147 151anti-parallel
Strand 6
B
161 162anti-parallel
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