Analysis of interatomic Contacts of Structural Units in PDB entry:
6AMS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AMS entry

There are 4 chains in PDB entry 6AMS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 367
B	MET 1	ARG 366
C	MET 1	LEU 367
D	MET 1	LEU 367

There are 43 helices in PDB entry 6AMS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	19	Right-handed alpha
Helix 2	AA2	A	27	30	Right-handed 310
Helix 3	AA3	A	72	82	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	132	143	Right-handed alpha
Helix 6	AA6	A	144	146	Right-handed 310
Helix 7	AA7	A	152	155	Right-handed 310
Helix 8	AA8	A	198	208	Right-handed alpha
Helix 9	AA9	A	244	249	Right-handed alpha
Helix 10	AB1	A	261	273	Right-handed alpha
Helix 11	AB2	A	322	330	Right-handed alpha
Helix 12	AB3	B	7	19	Right-handed alpha
Helix 13	AB4	B	27	30	Right-handed 310
Helix 14	AB5	B	72	82	Right-handed alpha
Helix 15	AB6	B	112	116	Right-handed 310
Helix 16	AB7	B	132	143	Right-handed alpha
Helix 17	AB8	B	144	146	Right-handed 310
Helix 18	AB9	B	152	155	Right-handed 310
Helix 19	AC1	B	198	208	Right-handed alpha
Helix 20	AC2	B	244	249	Right-handed alpha
Helix 21	AC3	B	261	273	Right-handed alpha
Helix 22	AC4	B	322	330	Right-handed alpha
Helix 23	AC5	C	7	21	Right-handed alpha
Helix 24	AC6	C	27	30	Right-handed 310
Helix 25	AC7	C	72	81	Right-handed alpha
Helix 26	AC8	C	112	116	Right-handed 310
Helix 27	AC9	C	132	143	Right-handed alpha
Helix 28	AD1	C	144	146	Right-handed 310
Helix 29	AD2	C	198	208	Right-handed alpha
Helix 30	AD3	C	244	249	Right-handed alpha
Helix 31	AD4	C	261	273	Right-handed alpha
Helix 32	AD5	C	322	332	Right-handed alpha
Helix 33	AD6	D	7	21	Right-handed alpha
Helix 34	AD7	D	27	30	Right-handed 310
Helix 35	AD8	D	72	82	Right-handed alpha
Helix 36	AD9	D	112	116	Right-handed 310
Helix 37	AE1	D	132	143	Right-handed alpha
Helix 38	AE2	D	144	146	Right-handed 310
Helix 39	AE3	D	152	155	Right-handed 310
Helix 40	AE4	D	198	208	Right-handed alpha
Helix 41	AE5	D	244	249	Right-handed alpha
Helix 42	AE6	D	261	273	Right-handed alpha
Helix 43	AE7	D	322	330	Right-handed alpha

There are 12 sheets in PDB entry 6AMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	6	first strand
Strand 2	A	87	93	anti-parallel
Strand 3	A	96	101	anti-parallel
Strand 4	A	104	109	anti-parallel
Strand 5	B	302	308	anti-parallel
Strand 6	B	290	296	anti-parallel
Strand 7	B	281	287	anti-parallel
Strand 8	B	316	321	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	41	47	anti-parallel
Strand 4	A	51	58	anti-parallel
Strand 5	A	231	236	anti-parallel
Strand 6	A	223	227	anti-parallel
Strand 7	A	214	219	anti-parallel
Strand 8	A	126	131	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	166	172	anti-parallel
Strand 4	A	176	183	anti-parallel
Strand 5	A	358	362	anti-parallel
Strand 6	A	348	352	anti-parallel
Strand 7	A	336	341	anti-parallel
Strand 8	A	255	260	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	321	first strand
Strand 2	A	281	287	anti-parallel
Strand 3	A	290	296	anti-parallel
Strand 4	A	302	307	anti-parallel
Strand 5	B	104	109	anti-parallel
Strand 6	B	96	101	anti-parallel
Strand 7	B	87	93	anti-parallel
Strand 8	B	2	6	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	32	38	anti-parallel
Strand 3	B	41	47	anti-parallel
Strand 4	B	51	58	anti-parallel
Strand 5	B	231	236	anti-parallel
Strand 6	B	223	227	anti-parallel
Strand 7	B	214	219	anti-parallel
Strand 8	B	126	131	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	166	172	anti-parallel
Strand 4	B	176	183	anti-parallel
Strand 5	B	358	362	anti-parallel
Strand 6	B	348	352	anti-parallel
Strand 7	B	336	341	anti-parallel
Strand 8	B	255	260	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	6	first strand
Strand 2	C	87	93	anti-parallel
Strand 3	C	96	101	anti-parallel
Strand 4	C	104	109	anti-parallel
Strand 5	D	302	308	anti-parallel
Strand 6	D	290	296	anti-parallel
Strand 7	D	281	287	anti-parallel
Strand 8	D	316	321	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	41	47	anti-parallel
Strand 4	C	51	58	anti-parallel
Strand 5	C	231	236	anti-parallel
Strand 6	C	223	227	anti-parallel
Strand 7	C	214	219	anti-parallel
Strand 8	C	126	131	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	197	first strand
Strand 2	C	157	163	anti-parallel
Strand 3	C	166	172	anti-parallel
Strand 4	C	176	183	anti-parallel
Strand 5	C	358	362	anti-parallel
Strand 6	C	348	352	anti-parallel
Strand 7	C	336	341	anti-parallel
Strand 8	C	255	260	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	321	first strand
Strand 2	C	281	287	anti-parallel
Strand 3	C	290	296	anti-parallel
Strand 4	C	302	307	anti-parallel
Strand 5	D	104	109	anti-parallel
Strand 6	D	96	101	anti-parallel
Strand 7	D	87	93	anti-parallel
Strand 8	D	2	6	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	41	47	anti-parallel
Strand 4	D	51	58	anti-parallel
Strand 5	D	231	236	anti-parallel
Strand 6	D	223	227	anti-parallel
Strand 7	D	214	219	anti-parallel
Strand 8	D	126	131	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	197	first strand
Strand 2	D	157	163	anti-parallel
Strand 3	D	166	172	anti-parallel
Strand 4	D	176	183	anti-parallel
Strand 5	D	358	362	anti-parallel
Strand 6	D	348	352	anti-parallel
Strand 7	D	336	341	anti-parallel
Strand 8	D	255	260	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AMS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AMS