Analysis of interatomic Contacts of Structural Units in PDB entry:
6AMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AMX entry

There is 1 chain in PDB entry 6AMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2HIS 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6AMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
59 69Right-handed alpha
Helix 3
AA3
A
86 90Right-handed 310
Helix 4
AA4
A
99 111Right-handed alpha
Helix 5
AA5
A
114 130Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
138 142Right-handed 310
Helix 8
AA8
A
143 156Right-handed alpha
Helix 9
AA9
A
166 171Right-handed 310
Helix 10
AB1
A
175 190Right-handed alpha
Helix 11
AB2
A
200 208Right-handed alpha
Helix 12
AB3
A
224 239Right-handed alpha
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There are 2 sheets in PDB entry 6AMX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 43first strand
Strand 2
A
3 13anti-parallel
Strand 3
A
75 79anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
162 165parallel
Strand 3
A
193 197parallel
Strand 4
A
49 53parallel
Strand 5
A
210 215parallel
Strand 6
A
218 223anti-parallel
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