Analysis of interatomic Contacts of Structural Units in PDB entry:
6AOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AOI entry

There are 2 chains in PDB entry 6AOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 610
B
 PRO 4VAL 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6AOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 41Right-handed alpha
Helix 2
AA2
A
81 87Right-handed alpha
Helix 3
AA3
A
107 113Right-handed alpha
Helix 4
AA4
A
129 140Right-handed alpha
Helix 5
AA5
A
153 164Right-handed alpha
Helix 6
AA6
A
189 193Right-handed 310
Helix 7
AA7
A
290 296Right-handed alpha
Helix 8
AA8
A
324 338Right-handed alpha
Helix 9
AA9
A
374 388Right-handed alpha
Helix 10
AB1
A
392 397Right-handed alpha
Helix 11
AB2
A
403 407Right-handed 310
Helix 12
AB3
A
408 415Right-handed alpha
Helix 13
AB4
A
428 436Right-handed alpha
Helix 14
AB5
A
453 465Right-handed alpha
Helix 15
AB6
A
477 484Right-handed 310
Helix 16
AB7
A
516 537Right-handed alpha
Helix 17
AB8
A
556 564Right-handed alpha
Helix 18
AB9
A
584 588Right-handed 310
Helix 19
AC1
A
589 591Right-handed 310
Helix 20
AC2
B
28 41Right-handed alpha
Helix 21
AC3
B
81 87Right-handed alpha
Helix 22
AC4
B
107 115Right-handed alpha
Helix 23
AC5
B
129 141Right-handed alpha
Helix 24
AC6
B
153 163Right-handed alpha
Helix 25
AC7
B
189 193Right-handed 310
Helix 26
AC8
B
290 299Right-handed alpha
Helix 27
AC9
B
323 338Right-handed alpha
Helix 28
AD1
B
374 388Right-handed alpha
Helix 29
AD2
B
392 397Right-handed alpha
Helix 30
AD3
B
403 407Right-handed 310
Helix 31
AD4
B
408 415Right-handed alpha
Helix 32
AD5
B
428 435Right-handed alpha
Helix 33
AD6
B
453 465Right-handed alpha
Helix 34
AD7
B
480 484Right-handed 310
Helix 35
AD8
B
516 536Right-handed alpha
Helix 36
AD9
B
556 564Right-handed alpha
Helix 37
AE1
B
584 588Right-handed 310
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There are 10 sheets in PDB entry 6AOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
97 102parallel
Strand 3
A
74 80parallel
Strand 4
A
145 150parallel
Strand 5
A
5 11parallel
Strand 6
A
166 174parallel
Strand 7
A
241 250anti-parallel
Strand 8
A
236 238anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
97 102parallel
Strand 3
A
74 80parallel
Strand 4
A
145 150parallel
Strand 5
A
5 11parallel
Strand 6
A
166 174parallel
Strand 7
A
241 250anti-parallel
Strand 8
A
227 232anti-parallel
Strand 9
A
319 320parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
182 183anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
349 360anti-parallel
Strand 3
A
539 553anti-parallel
Strand 4
A
502 513parallel
Strand 5
A
490 497anti-parallel
Strand 6
A
472 474anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 576first strand
Strand 2
A
593 596anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
97 102parallel
Strand 3
B
74 80parallel
Strand 4
B
145 152parallel
Strand 5
B
5 11parallel
Strand 6
B
166 174parallel
Strand 7
B
241 250anti-parallel
Strand 8
B
236 238anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
97 102parallel
Strand 3
B
74 80parallel
Strand 4
B
145 152parallel
Strand 5
B
5 11parallel
Strand 6
B
166 174parallel
Strand 7
B
241 250anti-parallel
Strand 8
B
227 232anti-parallel
Strand 9
B
319 320parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
182 183anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
349 360anti-parallel
Strand 3
B
539 553anti-parallel
Strand 4
B
502 513parallel
Strand 5
B
490 497anti-parallel
Strand 6
B
472 474anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
573 576first strand
Strand 2
B
593 596anti-parallel
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