Analysis of interatomic Contacts of Structural Units in PDB entry:
6APF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6APF entry

There are 2 chains in PDB entry 6APF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 281
B
 MET 1ALA 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6APF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
24 36Right-handed alpha
Helix 3
AA3
A
38 46Right-handed alpha
Helix 4
AA4
A
47 52Right-handed 310
Helix 5
AA5
A
53 76Right-handed alpha
Helix 6
AA6
A
87 96Right-handed alpha
Helix 7
AA7
A
100 118Right-handed alpha
Helix 8
AA8
A
130 141Right-handed alpha
Helix 9
AA9
A
162 169Right-handed alpha
Helix 10
AB1
A
169 176Right-handed alpha
Helix 11
AB2
A
192 194Right-handed 310
Helix 12
AB3
A
195 207Right-handed alpha
Helix 13
AB4
A
228 230Right-handed 310
Helix 14
AB5
A
231 240Right-handed alpha
Helix 15
AB6
A
246 256Right-handed alpha
Helix 16
AB7
A
268 281Right-handed alpha
Helix 17
AB8
B
17 24Right-handed alpha
Helix 18
AB9
B
24 36Right-handed alpha
Helix 19
AC1
B
38 46Right-handed alpha
Helix 20
AC2
B
47 52Right-handed 310
Helix 21
AC3
B
53 76Right-handed alpha
Helix 22
AC4
B
87 96Right-handed alpha
Helix 23
AC5
B
100 118Right-handed alpha
Helix 24
AC6
B
130 141Right-handed alpha
Helix 25
AC7
B
162 169Right-handed alpha
Helix 26
AC8
B
169 176Right-handed alpha
Helix 27
AC9
B
192 194Right-handed 310
Helix 28
AD1
B
195 207Right-handed alpha
Helix 29
AD2
B
228 230Right-handed 310
Helix 30
AD3
B
231 240Right-handed alpha
Helix 31
AD4
B
246 256Right-handed alpha
Helix 32
AD5
B
268 281Right-handed alpha
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There are 4 sheets in PDB entry 6APF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
81 84parallel
Strand 3
A
2 6parallel
Strand 4
A
260 263parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
122 127anti-parallel
Strand 3
A
156 161anti-parallel
Strand 4
A
146 153anti-parallel
Strand 5
A
244 245parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
81 84parallel
Strand 3
B
2 6parallel
Strand 4
B
260 263parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
122 127anti-parallel
Strand 3
B
156 161anti-parallel
Strand 4
B
146 153anti-parallel
Strand 5
B
244 245parallel
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