Analysis of interatomic Contacts of Structural Units in PDB entry:
6APH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6APH entry

There is 1 chain in PDB entry 6APH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6TYR 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6APH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
17 31Right-handed alpha
Helix 3
AA3
A
32 43Right-handed alpha
Helix 4
AA4
A
44 46Right-handed 310
Helix 5
AA5
A
60 73Right-handed alpha
Helix 6
AA6
A
88 98Right-handed alpha
Helix 7
AA7
A
109 121Right-handed alpha
Helix 8
AA8
A
138 148Right-handed alpha
Helix 9
AA9
A
149 155Right-handed 310
Helix 10
AB1
A
162 175Right-handed alpha
Helix 11
AB2
A
188 193Right-handed alpha
Helix 12
AB3
A
194 213Right-handed alpha
Helix 13
AB4
A
227 239Right-handed alpha
Helix 14
AB5
A
250 260Right-handed alpha
Helix 15
AB6
A
266 271Right-handed alpha
Helix 16
AB7
A
272 274Right-handed 310
Helix 17
AB8
A
288 293Right-handed alpha
Helix 18
AB9
A
307 311Right-handed 310
Helix 19
AC1
A
312 321Right-handed alpha
Helix 20
AC2
A
322 324Right-handed 310
Helix 21
AC3
A
346 348Right-handed 310
Helix 22
AC4
A
349 355Right-handed alpha
Helix 23
AC5
A
359 381Right-handed alpha
Helix 24
AC6
A
382 384Right-handed 310
Helix 25
AC7
A
392 403Right-handed alpha
Helix 26
AC8
A
404 408Right-handed 310
Helix 27
AC9
A
415 423Right-handed alpha
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There are 3 sheets in PDB entry 6APH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
76 80parallel
Strand 3
A
52 56parallel
Strand 4
A
132 135parallel
Strand 5
A
158 160parallel
Strand 6
A
182 184parallel
Strand 7
A
388 389parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
128 129anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
243 247parallel
Strand 3
A
220 224parallel
Strand 4
A
276 279parallel
Strand 5
A
299 303parallel
Strand 6
A
339 344parallel
Strand 7
A
331 336anti-parallel
Strand 8
A
325 328anti-parallel
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